Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C11
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 31 0.100
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 30 0.17
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.23
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 29 0.23
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 27 0.93
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 2.2
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 26 2.2
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 2.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 2.8
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 25 3.8
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 3.8
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 3.8
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.6
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 6.6
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|... 25 6.6
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 6.6
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 6.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 6.6
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 24 8.7
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac... 24 8.7
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 8.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 24 8.7
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 24 8.7
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 30.7 bits (66), Expect = 0.100
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +2
Query: 74 TESADENKKKLDNGVEPSNVSGSEDKLWADVDKDIGELLR---EVDPQGNEGSXXXXXLG 244
+E +N K ++ PS ++DK DV+ D ELLR E D ++
Sbjct: 74 SEEVSQNSKLIEGFTSPS----TDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSN 129
Query: 245 RYDKFRKSDKKVENGAGENEANVLNPPADKKSATEVNTTA*LR 373
+ + +K E+ + E+ + + +D++S +E T LR
Sbjct: 130 KNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQQLLR 172
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 29.9 bits (64), Expect = 0.17
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +2
Query: 182 ELLREVDPQGNEGSXXXXXLGRYDKFRKSDKKVENGAGENEANVLNPPADKKSATEVNTT 361
++LREVD +G E S + +F KSD ++ E N PA +N T
Sbjct: 10 DILREVDDEGQENSFLRKTTRKIQQFFKSDPGYQSRKAE-----YNSPAKATGDVNINVT 64
Query: 362 A 364
+
Sbjct: 65 S 65
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 29.5 bits (63), Expect = 0.23
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 2 HEDFIQEEKESTSAETGDKVKTDKTESADENKKKLD 109
H++F+ EEK + + D + T +E+ DEN L+
Sbjct: 33 HKEFVSEEKVTQRTASSDSLNTIASENNDENVINLE 68
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 29.5 bits (63), Expect = 0.23
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +2
Query: 47 TGDKVKTDKTESADENKKKLDNGVEPSNVSGSED-----KLWADVDKDIGELLREVDPQG 211
T +++K K E+ADEN+KK E G +D + W K++ L + P+
Sbjct: 129 TEEEIK--KGEAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNVLSLSEMITPE- 185
Query: 212 NEGSXXXXXLGRYDKFRKSDKKVENGAGEN 301
+EG+ R K K+E EN
Sbjct: 186 DEGALSHLVDIRISYMEKPGFKLEFEFAEN 215
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.5 bits (58), Expect = 0.93
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 104 LDNGVEPSNVSGSEDKLWADVDKDIGELLREVDPQGNEG 220
LDNGVE + + KL+ + +++ GE L+E+ + +G
Sbjct: 25 LDNGVEENEQVKNLLKLYKEANEEFGEKLQEITKECLKG 63
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 8 DFIQEEKESTSAETGDKVKTDKTESADENKKKL 106
DF++EE ST T DK+K E+AD N + +
Sbjct: 334 DFVEEEVISTDQPTLDKMKDQ--ENADVNDESI 364
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 2.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 183 NYYGKLTLKAMRGVMMMMIWAGMI 254
NY KL +KA+ + M++ W G++
Sbjct: 163 NYCSKLIIKALPLISMVIAWVGVV 186
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 38 SAETGDKVKTDKTESADENKKKLDNGVEPSNVSGSE 145
S+ G+ +K + T + K KL+NGV+ + S +E
Sbjct: 89 SSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNE 124
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 2.8
Identities = 18/81 (22%), Positives = 30/81 (37%)
Frame = +2
Query: 17 QEEKESTSAETGDKVKTDKTESADENKKKLDNGVEPSNVSGSEDKLWADVDKDIGELLRE 196
++E E E ++ ++ E DE + D E + G + D ++ E
Sbjct: 93 KKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRRNQFLDIEAE 152
Query: 197 VDPQGNEGSXXXXXLGRYDKF 259
VD E +GR D F
Sbjct: 153 VDEDEEELEDEEDEIGREDGF 173
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 3.8
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 29 ESTSAETGDKVKTDKTESADENKKKLDNGVEPSNVSGSE--DKLWA 160
E +SA+ K+ + +SA ++K+ PSNVSG E D+++A
Sbjct: 144 EDSSAKE-PSAKSGEEKSAPSSEKQSKETSSPSNVSGEERGDRVFA 188
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 2 HEDFIQEEKESTSAETGDKVKTDKTESADENKKKLDNGVEPSNV 133
HE +S +A+ GD++ + T S D + + LDN + S +
Sbjct: 80 HESSTALSAQSNTAQDGDQLASSSTISKD-HSETLDNKLNDSKI 122
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 146 DKLWADVDKDIGELLREVD 202
D LW +V+KD+ E L VD
Sbjct: 125 DALWKNVEKDLKETLDNVD 143
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 200 QLPVVVPLYLYRHLPTVYLHY 138
+LP VVP RHLP+ H+
Sbjct: 521 KLPTVVPELEARHLPSSVFHF 541
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 6.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 17 QEEKESTSAETGDKVKTDKTESADENKKKLDNGVEPSNVSGS 142
Q+EKE T K +A + K+ NG+ P N S S
Sbjct: 118 QKEKEEKRIVTLQNDGGSKNTTARKQKQLKKNGLRPLNTSAS 159
>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 174
Score = 24.6 bits (51), Expect = 6.6
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 59 VKTDKTESADENKKKLDNGVEPSNVSGSEDKLWADVDKDIGELLREVDP 205
VK D + +E ++LD VE + V S+++L +D + + ++DP
Sbjct: 106 VKIDSKLTEEEEFERLDKLVEGNRVEFSDEELQKLIDFKVLKKNYKLDP 154
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 26 KESTSAETGDKVKTDKTESADENKKKLDNGV 118
K+STS T + ++ K ++ D K+D V
Sbjct: 99 KKSTSTSTRKRARSSKKKATDSVSDKIDESV 129
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 24.6 bits (51), Expect = 6.6
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 5 EDFIQEEKESTSAETGDKV-KTDKTESADENKKKLDNGVEPSNVSGSE 145
E E T G+KV K K + K+ +DN E SNV ++
Sbjct: 61 EQIETSETSKTQDSEGNKVDKNLKENKSIRRKRSIDNDYELSNVKRND 108
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 47 TGDKVKTDKTESADENKKKLDNGVEPSNVSGSEDKLWADVDKDIGEL 187
+GD K K D+ KKK D + S+ S S K D + G L
Sbjct: 694 SGDSDKEHKEHKKDKQKKKNDQ-ISSSSKSASSFKKDRDKESIFGSL 739
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 83 ADENKKKLDNGVEPSNVSGSEDKLWADVD--KDIGELLREV 199
A +NK ++N + SNVS ++ + + D K+ G L +V
Sbjct: 178 ASDNKPLINNNLSSSNVSENQSRSFGSYDEVKNQGNNLHKV 218
>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 432 RIYYEHTHTINMNIMDVTLVRS 367
R Y+ ++ +N N+MD LV+S
Sbjct: 30 RSSYKSSYLVNQNLMDEALVKS 51
>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -3
Query: 364 SSGIDFCRRFFVSWWIQH----ICLVFSGAIF 281
S+ ID+C+RF S ++H + ++F+ IF
Sbjct: 51 SASIDYCQRFLFSSNLKHNYVNLNIIFTSCIF 82
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 2 HEDFIQEEKESTSAETGDKVKTDKTESADENKKKLDNGVEPS 127
HE+ EE + + +V TD+ ES + KK++ EP+
Sbjct: 223 HEEDGNEENVTVTKPV--EVATDQVESKEVKKKEVSETTEPT 262
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 56 KVKTDKTESADENKKKLDNGVEPSNVSGSEDKL 154
K K K+E ++K K PS+ S +ED++
Sbjct: 191 KPKPAKSEPVKQSKPKATETARPSSFSRNEDRV 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,224
Number of Sequences: 5004
Number of extensions: 21923
Number of successful extensions: 119
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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