Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C11
(432 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93239-1|AAB51391.1| 399|Homo sapiens Sec62 protein. 32 0.96
D87127-1|BAA13254.1| 399|Homo sapiens translocation protein-1 p... 32 0.96
BC012035-1|AAH12035.1| 399|Homo sapiens TLOC1 protein protein. 32 0.96
AB024586-1|BAB12685.1| 399|Homo sapiens translocation protein 1... 32 0.96
M14642-1|AAA51745.1| 396|Homo sapiens APOA4 protein. 31 2.2
M13654-1|AAA51744.1| 396|Homo sapiens APOA4 protein. 31 2.2
M10373-1|AAB59516.1| 244|Homo sapiens APOA4 protein. 31 2.2
BC148260-1|AAI48261.1| 394|Homo sapiens Unknown (protein for IM... 30 3.9
AY280798-1|AAQ16302.1| 754|Homo sapiens zinc finger protein 448... 30 3.9
AK124720-1|BAC85931.1| 278|Homo sapiens protein ( Homo sapiens ... 30 3.9
AF154846-1|AAF72104.1| 754|Homo sapiens zinc finger protein pro... 30 3.9
X13629-1|CAA31955.1| 396|Homo sapiens apolipoprotein A-IV precu... 29 5.1
M14566-1|AAA51748.1| 376|Homo sapiens APOA4 protein. 29 5.1
J02758-1|AAA96731.1| 396|Homo sapiens APOA4 protein. 29 5.1
BC113596-1|AAI13597.1| 396|Homo sapiens apolipoprotein A-IV pro... 29 5.1
BC113594-1|AAI13595.1| 396|Homo sapiens apolipoprotein A-IV pro... 29 5.1
BC074764-1|AAH74764.1| 396|Homo sapiens apolipoprotein A-IV pro... 29 5.1
AY555191-2|AAS68228.1| 396|Homo sapiens apolipoprotein A-IV pro... 29 5.1
AY422950-1|AAQ91809.1| 396|Homo sapiens apolipoprotein A-IV pro... 29 5.1
>U93239-1|AAB51391.1| 399|Homo sapiens Sec62 protein.
Length = 399
Score = 31.9 bits (69), Expect = 0.96
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 26 KESTSAETGDKVKTDKTESADENKKKLDNG-VEPSN--VSGSEDKLWADVDKDIGELLRE 196
K+ +ET + K+D E +D KK+ + G V P N GS + +D D D E R
Sbjct: 294 KKDEKSETKKQQKSDSEEKSDSEKKEDEEGKVGPGNHGTEGSGGERHSDTDSDRREDDRS 353
Query: 197 VDPQGN 214
GN
Sbjct: 354 QHSSGN 359
>D87127-1|BAA13254.1| 399|Homo sapiens translocation protein-1
protein.
Length = 399
Score = 31.9 bits (69), Expect = 0.96
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 26 KESTSAETGDKVKTDKTESADENKKKLDNG-VEPSN--VSGSEDKLWADVDKDIGELLRE 196
K+ +ET + K+D E +D KK+ + G V P N GS + +D D D E R
Sbjct: 294 KKDEKSETKKQQKSDSEEKSDSEKKEDEEGKVGPGNHGTEGSGGERHSDTDSDRREDDRS 353
Query: 197 VDPQGN 214
GN
Sbjct: 354 QHSSGN 359
>BC012035-1|AAH12035.1| 399|Homo sapiens TLOC1 protein protein.
Length = 399
Score = 31.9 bits (69), Expect = 0.96
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 26 KESTSAETGDKVKTDKTESADENKKKLDNG-VEPSN--VSGSEDKLWADVDKDIGELLRE 196
K+ +ET + K+D E +D KK+ + G V P N GS + +D D D E R
Sbjct: 294 KKDEKSETKKQQKSDSEEKSDSEKKEDEEGKVGPGNHGTEGSGGERHSDTDSDRREDDRS 353
Query: 197 VDPQGN 214
GN
Sbjct: 354 QHSSGN 359
>AB024586-1|BAB12685.1| 399|Homo sapiens translocation protein 1
protein.
Length = 399
Score = 31.9 bits (69), Expect = 0.96
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 26 KESTSAETGDKVKTDKTESADENKKKLDNG-VEPSN--VSGSEDKLWADVDKDIGELLRE 196
K+ +ET + K+D E +D KK+ + G V P N GS + +D D D E R
Sbjct: 294 KKDEKSETKKQQKSDSEEKSDSEKKEDEEGKVGPGNHGTEGSGGERHSDTDSDRREDDRS 353
Query: 197 VDPQGN 214
GN
Sbjct: 354 QHSSGN 359
>M14642-1|AAA51745.1| 396|Homo sapiens APOA4 protein.
Length = 396
Score = 30.7 bits (66), Expect = 2.2
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 8 DFIQEEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIG 181
D + + E E D ++ ADE K K+D VE ++ D+ +D+ +
Sbjct: 158 DPLAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVE 217
Query: 182 ELLREVDPQGNE 217
EL R + P +
Sbjct: 218 ELRRSLAPYAQD 229
>M13654-1|AAA51744.1| 396|Homo sapiens APOA4 protein.
Length = 396
Score = 30.7 bits (66), Expect = 2.2
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 8 DFIQEEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIG 181
D + + E E D ++ ADE K K+D VE ++ D+ +D+ +
Sbjct: 158 DPLAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVE 217
Query: 182 ELLREVDPQGNE 217
EL R + P +
Sbjct: 218 ELRRSLAPYAQD 229
>M10373-1|AAB59516.1| 244|Homo sapiens APOA4 protein.
Length = 244
Score = 30.7 bits (66), Expect = 2.2
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 8 DFIQEEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIG 181
D + + E E D ++ ADE K K+D VE ++ D+ +D+ +
Sbjct: 24 DPLAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVE 83
Query: 182 ELLREVDPQGNE 217
EL R + P +
Sbjct: 84 ELRRSLAPYAQD 95
>BC148260-1|AAI48261.1| 394|Homo sapiens Unknown (protein for
IMAGE:40116067) protein.
Length = 394
Score = 29.9 bits (64), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 5 EDFIQEEKESTSAETGDKVKTDKTESADENKKK 103
ED +E + TS E G +++ D E DE+KKK
Sbjct: 186 EDTFKELEGQTSDEEGSRLENDFLEITDEDKKK 218
>AY280798-1|AAQ16302.1| 754|Homo sapiens zinc finger protein 448
protein.
Length = 754
Score = 29.9 bits (64), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 5 EDFIQEEKESTSAETGDKVKTDKTESADENKKK 103
ED +E + TS E G +++ D E DE+KKK
Sbjct: 316 EDTFKELEGQTSDEEGSRLENDFLEITDEDKKK 348
>AK124720-1|BAC85931.1| 278|Homo sapiens protein ( Homo sapiens
cDNA FLJ42730 fis, clone BRAWH2010536, weakly similar
to Homo sapiens paraneoplastic antigen MA1 (PNMA1). ).
Length = 278
Score = 29.9 bits (64), Expect = 3.9
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 23 EKESTSAETGDKVKTDKTESADENKKKLDNGVEPSNVSGSEDK--LWADVDKDIGELLRE 196
+K S +++ +S+DE+ + ++ ++SG ED+ L+A + EL+R+
Sbjct: 178 KKRSRGGRPSAPARSEAEDSSDESLGIVIEEIDQGDLSGEEDQSALYATLQAAARELVRQ 237
Query: 197 VDPQGNEGS 223
P +EG+
Sbjct: 238 WAPCNSEGA 246
>AF154846-1|AAF72104.1| 754|Homo sapiens zinc finger protein
protein.
Length = 754
Score = 29.9 bits (64), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 5 EDFIQEEKESTSAETGDKVKTDKTESADENKKK 103
ED +E + TS E G +++ D E DE+KKK
Sbjct: 316 EDTFKELEGQTSDEEGSRLENDFLEITDEDKKK 348
>X13629-1|CAA31955.1| 396|Homo sapiens apolipoprotein A-IV
precursor protein.
Length = 396
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 EEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIGELLR 193
+ E E D ++ ADE K K+D VE ++ D+ +D+ + EL R
Sbjct: 162 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 221
Query: 194 EVDPQGNE 217
+ P +
Sbjct: 222 SLAPYAQD 229
>M14566-1|AAA51748.1| 376|Homo sapiens APOA4 protein.
Length = 376
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 EEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIGELLR 193
+ E E D ++ ADE K K+D VE ++ D+ +D+ + EL R
Sbjct: 142 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 201
Query: 194 EVDPQGNE 217
+ P +
Sbjct: 202 SLAPYAQD 209
>J02758-1|AAA96731.1| 396|Homo sapiens APOA4 protein.
Length = 396
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 EEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIGELLR 193
+ E E D ++ ADE K K+D VE ++ D+ +D+ + EL R
Sbjct: 162 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 221
Query: 194 EVDPQGNE 217
+ P +
Sbjct: 222 SLAPYAQD 229
>BC113596-1|AAI13597.1| 396|Homo sapiens apolipoprotein A-IV
protein.
Length = 396
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 EEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIGELLR 193
+ E E D ++ ADE K K+D VE ++ D+ +D+ + EL R
Sbjct: 162 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 221
Query: 194 EVDPQGNE 217
+ P +
Sbjct: 222 SLAPYAQD 229
>BC113594-1|AAI13595.1| 396|Homo sapiens apolipoprotein A-IV
protein.
Length = 396
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 EEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIGELLR 193
+ E E D ++ ADE K K+D VE ++ D+ +D+ + EL R
Sbjct: 162 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 221
Query: 194 EVDPQGNE 217
+ P +
Sbjct: 222 SLAPYAQD 229
>BC074764-1|AAH74764.1| 396|Homo sapiens apolipoprotein A-IV
protein.
Length = 396
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 EEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIGELLR 193
+ E E D ++ ADE K K+D VE ++ D+ +D+ + EL R
Sbjct: 162 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 221
Query: 194 EVDPQGNE 217
+ P +
Sbjct: 222 SLAPYAQD 229
>AY555191-2|AAS68228.1| 396|Homo sapiens apolipoprotein A-IV
protein.
Length = 396
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 EEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIGELLR 193
+ E E D ++ ADE K K+D VE ++ D+ +D+ + EL R
Sbjct: 162 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 221
Query: 194 EVDPQGNE 217
+ P +
Sbjct: 222 SLAPYAQD 229
>AY422950-1|AAQ91809.1| 396|Homo sapiens apolipoprotein A-IV
protein.
Length = 396
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 EEKESTSAETGDKVKTDKTESADENKKKLDNGVE--PSNVSGSEDKLWADVDKDIGELLR 193
+ E E D ++ ADE K K+D VE ++ D+ +D+ + EL R
Sbjct: 162 QRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRR 221
Query: 194 EVDPQGNE 217
+ P +
Sbjct: 222 SLAPYAQD 229
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,989,373
Number of Sequences: 237096
Number of extensions: 725658
Number of successful extensions: 7023
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6996
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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