Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C11
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 162 MSIKI*GNYYGKLTLKAMRG 221
           M   +  NY G +  KAM+G
Sbjct: 292 MEFAVVNNYMGPVATKAMKG 311


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 358 GIDFCRRFFVSWWIQHICLVFSGAIFNFFIAL 263
           GI +       W   +  ++ + AIF FF+++
Sbjct: 61  GIGYAAAVMSCWMNVYYIVILAWAIFYFFMSM 92


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 71  KTESADENKKKLD 109
           +TE  +EN KKLD
Sbjct: 319 ETEEEEENDKKLD 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,917
Number of Sequences: 438
Number of extensions: 1657
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)