Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C10
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   3.5  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    25   3.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   4.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.1  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   6.1  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    24   8.1  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 367  GCMNI-PVLFECRRLTLGIRFVFFSSSAPIECGNITNKKEK*VLRTVLR 224
            GC  + PVL   RR  + I  VFF S  P+   ++    EK V+R V R
Sbjct: 1314 GCYMLKPVLDWIRRCIISIFIVFFISFLPLVVHDLL---EKGVIRAVAR 1359


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 312 LIPSVNLLHSKRTGIFIHPTAMYRNTTTCYMNV 410
           L P+ NL+ SK    F H TA+  +  TC   V
Sbjct: 169 LRPTPNLICSKCNTTFNHSTALMMHEATCLNQV 201


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 278  FYWSRRRKEDESYTEC*SSTFKENRNIHTPHGYVQKYY 391
            FYW  RR+ +E Y     +    +  I     Y+QK+Y
Sbjct: 2162 FYWRLRRRLNEHYALQKITQLIPSLTIRESREYLQKWY 2199


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 213  TKLSRKTVRRTYFSFLL 263
            TK +R+T R  Y+SFLL
Sbjct: 2037 TKSTRQTCRHLYYSFLL 2053


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 329 SSTFKENRNIHTPHGYVQKYYNVLYEC 409
           SS FK+ +NIH   G++ + +  L +C
Sbjct: 334 SSLFKDIKNIHELLGFLGRLFMDLQDC 360


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 370 VGCMNIPVLFECRRLTLGIRFVFFSSSAPIECGNITNKKEK 248
           +G   + VL     + L   F FF+SS+P      T + EK
Sbjct: 488 IGIAIVAVLGSLTAVILTCYFYFFASSSPASLSTGTTEAEK 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,292
Number of Sequences: 5004
Number of extensions: 29952
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)