Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C10
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954...    31   0.48 
09_01_0154 + 2298432-2299415                                           28   3.4  
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941...    27   4.5  
11_06_0525 - 24579393-24581195                                         27   5.9  

>05_03_0194 +
           9547626-9547715,9549235-9549311,9549493-9549564,
           9549648-9549719,9550047-9550118,9550199-9550225,
           9550226-9550297,9550382-9550453,9550897-9550968,
           9551047-9551121,9551226-9551297,9551384-9551449,
           9551544-9551609,9551683-9551727,9551822-9551886,
           9551971-9552350,9552419-9552545,9552688-9552846,
           9552929-9553047,9553182-9553392,9553582-9553762,
           9553845-9553995,9554086-9554448
          Length = 901

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -2

Query: 328 LTLGIRFVFFSSSAPIECGNITNKKEK*VLRTVLRDNLVIACC*LCKMYAVTSLDIYNYK 149
           L+LGI F  FS   P E GN+TN ++   L++   +N  I  C     +  T   + N K
Sbjct: 102 LSLGISFNNFSGQLPKELGNMTNLQQMITLQSF--NNRYIDSCGFSGPFPSTFSKLQNLK 159

Query: 148 V 146
           +
Sbjct: 160 I 160


>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 240 RTYFSFLLVMFPHS---IGAEEEKKTNLIPSVNLLHSKRTGIFIHPTAMYRNTT 392
           R +    L++F H+   +G        L PS++ +HS  TG+ +H  A  +NTT
Sbjct: 32  RLFAPIFLLIFCHTFIFLGITAIHVNPLAPSLDSIHSLATGVLVHVYAP-KNTT 84


>05_03_0188 +
           9417186-9417306,9417418-9417604,9417669-9417801,
           9418673-9418752,9421940-9422011,9422211-9422282,
           9422361-9422432,9422720-9422791,9423038-9423109,
           9423335-9423406,9423497-9423568,9423648-9423722,
           9423824-9423895,9424072-9424137,9424223-9424299,
           9424642-9425021,9425112-9425310,9425380-9425538,
           9425620-9425738,9425942-9426092,9426257-9426488,
           9426573-9426723,9426808-9427125
          Length = 1007

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 328 LTLGIRFVFFSSSAPIECGNITNKKE 251
           L+LGI +  FS   P E GN+T+ K+
Sbjct: 244 LSLGISYCNFSGELPDELGNMTSLKQ 269


>11_06_0525 - 24579393-24581195
          Length = 600

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 149 GTLYNKNVIDQNP*KTSSQIKSNDIYTKLISFS 51
           G +Y  +  +Q P + + + +S+DIYT  +SF+
Sbjct: 143 GPMYRTDGAEQRPWQEARRWRSDDIYTYTLSFA 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,264,326
Number of Sequences: 37544
Number of extensions: 156937
Number of successful extensions: 280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)