Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C10
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024824-6|AAK85504.2|  567|Caenorhabditis elegans Hypothetical ...    29   1.3  
U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF016678-9|AAB66155.1|  155|Caenorhabditis elegans Hypothetical ...    27   5.4  

>AC024824-6|AAK85504.2|  567|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.4 protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 228 KTVRRTYFSFLLVMFPHSIGAEEEKKTNLIPSVNLLHSKRTGIFIHPTAMYRNTTT 395
           K+VR+      +++ PH +  E  +     P V  +     G F H   +YR+ TT
Sbjct: 425 KSVRKASEKGTVLLTPHPLAIENIRTWEFAPIVIFVQPPEFGEFKHTREVYRSQTT 480


>U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical
           protein F41C6.7 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 237 RRTYFS--FLLVMFPHSIGAEEEKKTNLIPSVNL 332
           R T++S  FL  +F H + A +++K   +P+VNL
Sbjct: 37  RSTFYSLQFLYYVFSHRMSASQKQKVVKVPTVNL 70


>AF016678-9|AAB66155.1|  155|Caenorhabditis elegans Hypothetical
           protein K07E8.10 protein.
          Length = 155

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = +3

Query: 165 SSEVTAYILQS*QQAITKLSRKTVRRTYFSFLLVMFPHSIGA-------EEEKKTNLIPS 323
           S  +T  ++   QQ     S+KT  RT+F   L ++P ++ A       ++   T L   
Sbjct: 18  SDYLTLQLIPREQQGSFTTSKKTETRTFFPGDLTIWPAALLAAAIRLDNDQVDITRLSSV 77

Query: 324 VNLLHSKRTGI-FIHPTAMYRNTTTC 398
           VN+L      + F H   +YR    C
Sbjct: 78  VNMLFKNHIKVTFDHARGLYRTKHDC 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,851,436
Number of Sequences: 27780
Number of extensions: 165819
Number of successful extensions: 288
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)