Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C09
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 195 3e-51
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 56 3e-09
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 55 7e-09
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 1.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.0
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.7
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 3.5
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 4.7
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 4.7
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 6.2
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 8.1
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 8.1
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 8.1
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 195 bits (476), Expect = 3e-51
Identities = 94/195 (48%), Positives = 126/195 (64%), Gaps = 1/195 (0%)
Frame = +1
Query: 4 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 183
R++ +L RLKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 60 RRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANG 119
Query: 184 XD-EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCI 360
+ K+P ++ G N V L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY I
Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAI 179
Query: 361 VKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLG 540
VK K+RLG ++H+KT +A+T V D+ + +V A+ NF+ +Y+E RR WGGG++G
Sbjct: 180 VKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMG 239
Query: 541 NKSNARIAKLEKAKA 585
K+ A +AK KA A
Sbjct: 240 GKTQALLAKRAKAAA 254
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 56.4 bits (130), Expect = 3e-09
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 217 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALV 393
LR G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG A
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACG 91
Query: 394 HRKTCTSVALTNVESGD 444
+ S ++T E+ D
Sbjct: 92 VSRPVISASITTNEASD 108
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 55.2 bits (127), Expect = 7e-09
Identities = 35/103 (33%), Positives = 51/103 (49%)
Frame = +1
Query: 202 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 381
K+ + LR G V K V K + LV++A D+ P++++ +P LC VPY K L
Sbjct: 50 KQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELL 108
Query: 382 GALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEEL 510
G + K TS + V G + SKV E + E YEE+
Sbjct: 109 GEASNTKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEI 145
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -2
Query: 542 LPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPF 363
L RT PP L + SL + F + A SPD + T LR PN ++P+
Sbjct: 276 LERTEPPNSLNSKISYSLYCNETLVSFFRRPAFSPDGLLL-VTPAGRLRPHGQPNFEVPY 334
Query: 362 T 360
T
Sbjct: 335 T 335
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -2
Query: 473 ASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPILRQSAGRKSTSSIGS 294
++T++ + ST ++L+ V ++ T +Q + KS+ +G
Sbjct: 587 SNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSEFVGQ 646
Query: 293 TS*AMTTSCAFFFSTSLVT 237
T+ TTS + F+T+L T
Sbjct: 647 TTTEYTTSGSVGFTTTLAT 665
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 483 QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 575
Q++ L R+ Q +G + R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 527 PPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFT 360
P Q + +SS S V + S++ + S DST + +T + T P P T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 10 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 111
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 23 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 121
S V R Q+TSSP + ++PQ KV + + G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 380 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 294
+ +LPF P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 457 SKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAK 582
+K+ EA K FNE E+L GGG L K+ A+L+ +
Sbjct: 23 AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIR 63
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +1
Query: 82 TAKGLFKILEKYR 120
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 362 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 222
T+ I+ +AG + T+S+GS+S A T + A ST V +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,507
Number of Sequences: 5004
Number of extensions: 43766
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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