Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C09
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 217 4e-57
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 190 5e-49
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 175 2e-44
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 52 3e-07
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 50 1e-06
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 49 3e-06
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 49 3e-06
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.055
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.055
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 32 0.39
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 29 2.7
01_01_0437 - 3293624-3294029,3294094-3294212 29 2.7
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 29 3.6
11_01_0750 - 6315126-6315896,6316371-6316784 28 6.3
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 6.3
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 27 8.3
04_04_0620 + 26656072-26656417,26656585-26657396 27 8.3
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 8.3
02_04_0134 - 20109610-20109984 27 8.3
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 217 bits (531), Expect = 4e-57
Identities = 104/194 (53%), Positives = 138/194 (71%)
Frame = +1
Query: 4 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 183
RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 58 RQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEG 117
Query: 184 XDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 363
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIV
Sbjct: 118 KTVEA-KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIV 176
Query: 364 KGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGN 543
KGK+RLG++VH+KT + + LT V++ D+ FSK++EAIK NFN++++E+R+ WGGGV+G+
Sbjct: 177 KGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGS 236
Query: 544 KSNARIAKLEKAKA 585
KS A+ EK A
Sbjct: 237 KSQAKTKAREKLLA 250
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 190 bits (464), Expect = 5e-49
Identities = 94/194 (48%), Positives = 135/194 (69%)
Frame = +1
Query: 4 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 183
RQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 59 RQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEA----------- 107
Query: 184 XDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 363
K+P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIV
Sbjct: 108 ------KKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 161
Query: 364 KGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGN 543
KGK+RLG++VH+KT + + LT V++ D+ FSK++EAIK+NFN++++E+R+ WGGG++G+
Sbjct: 162 KGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGS 221
Query: 544 KSNARIAKLEKAKA 585
KS A+ EK A
Sbjct: 222 KSQAKTKAREKLLA 235
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 175 bits (427), Expect = 2e-44
Identities = 92/194 (47%), Positives = 124/194 (63%)
Frame = +1
Query: 4 RQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXX 183
RQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 42 RQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEG 101
Query: 184 XDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIV 363
K+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM
Sbjct: 102 KTVEA-KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKM------- 153
Query: 364 KGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGN 543
+VH+KT + + LT V++ D+ FSK++EAIK NFN++++E+R+ WGGGV+G+
Sbjct: 154 -------EIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGS 206
Query: 544 KSNARIAKLEKAKA 585
KS A+ EK A
Sbjct: 207 KSQAKTKAREKLLA 220
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +1
Query: 217 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 390
L+ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104
Query: 391 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEELRRHWGG 528
R TC + LT G+ V E +KT++++ E+ G
Sbjct: 105 TKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVMSEVAEAGNG 148
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +1
Query: 217 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 384
L+ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +1
Query: 217 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 384
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 217 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 390
L+ G V K + + L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104
Query: 391 VHRKTCTSVALTNVESGDRAAFSKVVEAIKTNFNERYEEL 510
R TC + +T G+ +V E +K++++ E+
Sbjct: 105 TKRPTCCVLVMTKPAKGE--INEEVKEKLKSDYDHVVAEV 142
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 34.7 bits (76), Expect = 0.055
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 226 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 384
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 34.7 bits (76), Expect = 0.055
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 226 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 384
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 31.9 bits (69), Expect = 0.39
Identities = 30/119 (25%), Positives = 51/119 (42%)
Frame = -2
Query: 584 AFAFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPDSTFVRATLVQ 405
A AF L + A LL PP + + R ++ + R P+ + A
Sbjct: 9 ALAFF-LLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSD 67
Query: 404 VLRCTSAPNRDLPFTIQYGTPILRQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVTVLV 228
+R T D P T++YGT ++G+ S+ GST+ T S + S ++ V++
Sbjct: 68 KMRVTWITGGDAPATVEYGT-----TSGQYPFSATGSTN---TYSYVLYHSGNIHDVVI 118
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 496 RYEELRRHWGGGVLGNKSNARIAKLEKAK 582
R +EL WGG LGN ++K+EK K
Sbjct: 854 REKELMDAWGGVGLGNSMKPHLSKIEKDK 882
>01_01_0437 - 3293624-3294029,3294094-3294212
Length = 174
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 193 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 297
PPP + R GT+++ + KA++ VI HD +
Sbjct: 34 PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 578 AFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPD 435
A SS R L R+PPP LR + R ++V A T E A +P+
Sbjct: 14 AASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 393 YKRTQS*FTLHDTVRDSHLTAKRWQEEHKFDWVYVMSDDH 274
Y RT+ F +HD + L K+ + E KF + DDH
Sbjct: 214 YDRTRL-FAVHDNFKVIKLPYKQGKNERKFSMYIFLPDDH 252
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 23 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 148
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 334 RKMGVPYCIVKGKSRLGALVHRKTCTSV 417
R + P I+K +R+ A +H +TC+SV
Sbjct: 87 RLVNSPINIIKANARVKAALHNQTCSSV 114
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 190 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 300
+PP P + A + +VE KKAQ++ + H +DP
Sbjct: 344 QPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDP 380
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 374 DLPFTIQYGTPILRQSAGRKSTSSIGS 294
D+PF Y P++R + GRK + S+G+
Sbjct: 670 DVPFEKVYLHPMIRDAHGRKMSKSLGN 696
>02_04_0134 - 20109610-20109984
Length = 124
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 147 ASKESRRSQGC*ER*AATEKAKHPTRWNQHCYQAC*EEEGTACGHRS*RRP 299
A+ + R Q C E+ AA + + RW + C C + + C RRP
Sbjct: 15 AASRAERRQACSEQGAAKQARRLERRWAKQC--GCRQPQSEWCVANQCRRP 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,511
Number of Sequences: 37544
Number of extensions: 344254
Number of successful extensions: 1026
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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