Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C08
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 259 2e-70
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 259 2e-70
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 259 2e-70
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 139 3e-34
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.44
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.1
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 4.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 5.4
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 25 7.2
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 7.2
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 9.5
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 9.5
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 259 bits (634), Expect = 2e-70
Identities = 125/136 (91%), Positives = 132/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 259 bits (634), Expect = 2e-70
Identities = 125/136 (91%), Positives = 132/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 259 bits (634), Expect = 2e-70
Identities = 125/136 (91%), Positives = 132/136 (97%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 476 MPKDIQLARRIRGERA 523
PKD+QLARR+RGER+
Sbjct: 121 QPKDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 139 bits (336), Expect = 3e-34
Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 10/118 (8%)
Frame = +2
Query: 191 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 352
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 353 --KTD--LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 514
TD LR+QS A+ LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.44
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +2
Query: 221 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 382
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 383 IGALQEASEAYLVGLFE 433
+ A E EAY+ L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 438 PTFAPSTPNA*PLCLKTSSSPGE 506
P AP+TP++ P+ +S+SP E
Sbjct: 199 PRSAPNTPSSHPMSAASSASPAE 221
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 257 ALREIRRYQKSTELLIRKLPFQR 325
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 363 FVSSLLPLALCKRPVKPIWWVCLKTPTFAPS 455
F S+ PL + + I WVC+ T FA S
Sbjct: 671 FTSNFAPLKFDNQALSVIIWVCVFTCKFAES 701
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = -1
Query: 505 SPGELDVFRHNGYAFGVDGAKVGVFKQTHQIGFTGLLQSANGSRLETKIGFKVLSNFSNE 326
SPG D F + K+ + IGF L LE ++ + +L S
Sbjct: 166 SPGNHDEFTIRNLRLSFEPDKINNVEMAASIGFLAHLLQTLSKYLEKELAYPILCASSRS 225
Query: 325 SL 320
S+
Sbjct: 226 SI 227
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 477 IMVTRLAWMAQRLVSSNRPTR 415
I T W A RLV+ N PTR
Sbjct: 412 ITETNSNWFAHRLVAENDPTR 432
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 203 APSTGGVKKPHRYRPGTVALREIRRY 280
APS G K P P T+ + EIRR+
Sbjct: 25 APSGLGWKSPSLAEPFTLPISEIRRF 50
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 370 ETKIGFKVLSNFSNESLERQLADQQLRRF 284
+ + GFK + FSNE L+ +L + + +
Sbjct: 606 QQEFGFKYVQEFSNEDLQGKLIEANEKNY 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,550
Number of Sequences: 5004
Number of extensions: 44241
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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