Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C06
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0466 + 3702771-3703016,3703133-3703196,3703757-3704055,370... 118 2e-27
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298... 99 2e-21
05_05_0133 + 22614219-22614651,22614767-22615671,22615918-226162... 28 4.3
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023 28 5.7
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 28 5.7
01_01_0749 - 5794140-5794346,5795445-5795558,5795856-5796008,579... 28 5.7
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 27 7.5
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 27 10.0
>05_01_0466 +
3702771-3703016,3703133-3703196,3703757-3704055,
3704666-3704881,3705216-3705422,3705697-3705789,
3706098-3706196,3706300-3706329,3706885-3706938,
3707533-3707586,3707658-3707735,3707927-3708018,
3708093-3708150,3708248-3708322,3708930-3708977,
3709131-3709228,3709446-3709521,3709659-3709721,
3709810-3709901,3710207-3710275,3710410-3710473,
3710545-3710610,3710700-3710777
Length = 772
Score = 118 bits (285), Expect = 2e-27
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = +3
Query: 9 GLPARGKSQLAHRLARHLNWNGESTKVFDCSEYRRRHMALYGSHDIFRADNQQGSAIRRQ 188
GLPARGK+ A +L R+L W G T+ F+ +YRR S D FR DN +G R +
Sbjct: 377 GLPARGKTFTAAKLTRYLRWLGHETRHFNVGKYRRLKHGANQSADFFRDDNPEGIEARNE 436
Query: 189 SAREAVQDAVLWLKDGNSVAIFDGTNITREQRRELSEYCLVDMGFRILFIECYCEEQSLL 368
A A++D + W+ G V IFD TN TR++R L + + + +I+F+E C + +++
Sbjct: 437 VAALAMEDMIDWMHGGGQVGIFDATNSTRKRRYMLMK--MAEGNCKIIFLETICNDPNII 494
Query: 369 ETNIIEILHYSADYKSMSE-EEAVDDLRKKLEHYMRQYEPIEAGS 500
E N+ + S DY + E V D +++L +Y + YEP++ GS
Sbjct: 495 ERNVRLKIQQSPDYADQPDYETGVRDFKERLANYEKVYEPVQEGS 539
>03_02_0658 +
10228794-10228943,10229042-10229105,10229510-10229805,
10230689-10230904,10231409-10231549,10232407-10232499,
10234010-10234108,10234198-10234227,10234274-10234360,
10234636-10234689,10234758-10234835,10235128-10235202,
10236265-10236356,10236433-10236490,10236590-10236664,
10236966-10237013,10239003-10239065,10239167-10239258,
10239693-10239761,10239867-10239930,10240007-10240072,
10240170-10240271
Length = 703
Score = 99.1 bits (236), Expect = 2e-21
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 35/199 (17%)
Frame = +3
Query: 9 GLPARGKSQLAHRLARHLNWNGESTKVFDCSEYRR-RH----MALYGSH------DIFRA 155
GLPARGK+ A +L R+L W G TK F+ +YRR +H +L S+ D FR
Sbjct: 322 GLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGINQTSLSASNSVEQTADFFRG 381
Query: 156 DNQQGSAIRRQSAREAVQDAVLWLKDGNSVAIFDGTNITREQRRELSEYC---------- 305
DN++G R + A A++D + W+++G V IFD TN TR +R L +
Sbjct: 382 DNKEGVEARNEVAALAMEDMLSWMQEGGQVGIFDATNSTRNRRNMLMKMAEGKCKSPKLI 441
Query: 306 ---LVDMGFR----------ILFIECYCEEQSLLETNIIEILHYSADYKSMSEEEA-VDD 443
++++ + I+F+E C +Q++LE N+ + S DY ++ EA V D
Sbjct: 442 IVPIMNINRKRRTYKAYSCTIIFLETICNDQNVLERNMRLKVQRSPDYAEQTDFEAGVRD 501
Query: 444 LRKKLEHYMRQYEPIEAGS 500
+++L +Y + YEP+E GS
Sbjct: 502 FKERLAYYEKVYEPVEEGS 520
>05_05_0133 +
22614219-22614651,22614767-22615671,22615918-22616224,
22616307-22616380
Length = 572
Score = 28.3 bits (60), Expect = 4.3
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Frame = +3
Query: 9 GLPARGKSQLAHRLARHLNWNGESTKVFDCSEYRRRHMALYGSHDIFRADNQQGSAIRRQ 188
G R + +L H W GE D SE +H GSH + + +
Sbjct: 162 GYGFRASGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDES 221
Query: 189 SAREAVQDAVLWLKDGNSVAIFDGTNITREQ--RRELSEYC 305
+ + + NS A N+ E+ RR LS C
Sbjct: 222 QLKPFMSNYSQMANQSNSDAFISSVNLALEEISRRILSGMC 262
>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
Length = 620
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -2
Query: 507 STLTQLRSVHIASCNVPTSFSDHRLLPLHSYSCNRLSSG 391
S++ QL ++ + + + ++FSD RLL L S R++SG
Sbjct: 328 SSIAQLSNLGLVAIPILSAFSDLRLLNLAGNSIIRITSG 366
>01_06_0866 -
32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 141 DIFRADNQQGSAIRRQSAREAVQDAVLWLKDGNS 242
D+ AD Q G R AREAV+ +++ LK+GNS
Sbjct: 758 DLSFAD-QLGKKEHRDLAREAVRKSLVLLKNGNS 790
>01_01_0749 -
5794140-5794346,5795445-5795558,5795856-5796008,
5796124-5796207,5796262-5796399,5796500-5796598
Length = 264
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 408 YKSMSEEEAVDDLR--KKLEHYMRQYEPIEAGSESISYVRV 524
Y ++E + V+D + K ++H +R+ E +EAG + + + ++
Sbjct: 192 YNRLAEYKYVEDCQVAKVMDHQLRRIEKVEAGLKQLGWFQI 232
>02_05_0528 - 29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 316 ISTRQYSLSSLRCSRVIFVPSNIATLFPSLSHSTASCTASRAL 188
I++R+Y L + F PS+I L P + HS CT +R L
Sbjct: 899 IASRKYDLDAA----APFQPSDILNLQPVVKHSVPVCTDARNL 937
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/87 (19%), Positives = 37/87 (42%)
Frame = +3
Query: 129 YGSHDIFRADNQQGSAIRRQSAREAVQDAVLWLKDGNSVAIFDGTNITREQRRELSEYCL 308
YG HD F+ + A + + ++ D + +F + I + EYC+
Sbjct: 557 YGEHDDFKRYSYFSRAALELLYQSGKKIDIIHCHDWQTAFVFWVSTILYR----VQEYCI 612
Query: 309 VDMGFRILFIECYCEEQSLLETNIIEI 389
+ + FR L+I Y + ++ + + +
Sbjct: 613 LHLDFRHLYIGIYMQLEASAQLEFVSL 639
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,353
Number of Sequences: 37544
Number of extensions: 306126
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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