Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C05
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.29
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.38
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 29 0.38
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 1.2
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 1.2
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 26 2.0
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 2.0
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 2.7
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 26 2.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 2.7
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 3.6
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 25 6.2
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 6.2
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 25 6.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.2
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 24 8.2
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 24 8.2
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 8.2
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 24 8.2
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.1 bits (62), Expect = 0.29
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 5 ISRRPTLRRVLTKFDKTSSIHRTSTATSAMTLDRERPTALSRSKAKRTAKQPVNTEEESP 184
+SRRPT+ T FD+ S T T + +LD PT+L +++ V + S
Sbjct: 315 LSRRPTIN---TSFDRKFSPKLTRTPSLTKSLDPGTPTSLKSPSLRKSPSSFVQKDVYSR 371
Query: 185 QSRL 196
+ L
Sbjct: 372 SNSL 375
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 28.7 bits (61), Expect = 0.38
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 359 QSYAKPHQQPGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SP 222
Q Y+ PH +P + A SA +NL + P PP ++S +P
Sbjct: 183 QYYSSPHVRPAVGATMAGSAMRTFPSNLPLGHPPPPSDSANSSVTP 228
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.38
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 41 KFDKTSSIHRTSTATSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQ 187
K+ K ++ H AT ++ ER +AKR A++ TE ++PQ
Sbjct: 310 KYGKGAN-HLIKKATEERSIREERQRKYEERQAKRAARENAFTEHQTPQ 357
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 332 PGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SPACLKGGRV 198
PG+PA M++ G +VP P P + S S + A + G V
Sbjct: 269 PGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGAPV 313
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 64 PPHVDSNIGHDTR-----PRAPYGPLTFESKTYC*TTSQYRGGVATVSFVTR 204
P +SN+G TR PR P G T +S +T + RG V T + T+
Sbjct: 129 PASTNSNVGMTTRSGRQSPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTK 180
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 2.0
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 318 VLHAERHMRAAEQPCRSPAGTPMSGSFHQLIASLFERRPR-NKRDCGDSSSV 166
V+H E + E+PCRS +P S S AS P DSSS+
Sbjct: 276 VVHNEGNRNRRERPCRSNGSSPTSESALNSPASSVSSLPSLGASQTTDSSSL 327
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 39 PSSIKHLPSTARRQQHRP*HSTESALRPSHVRKQNVLLNNQSIPRRSRH 185
P S+ L + P HS S++ S ++NV+ +++S+P H
Sbjct: 191 PISVSPLKNVKAYISQSPTHSEASSVLSSEEEEENVINSSKSVPSFDLH 239
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 2.7
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 17 PTLRRVLTKFDKTSSIHRTSTATSAMTLDRERPTALSRSKAKRTAKQP-VNTEEESPQSR 193
P R LTK +S R S +TSA + S + +T QP V ++ P SR
Sbjct: 58 PKSRYALTKRSSSSEYPRRSASTSAKKNVIPITRSYSTTFFSKTNDQPTVTGNQDKPISR 117
Query: 194 LLRGLLSNKLAI-NWW 238
L ++KL I N+W
Sbjct: 118 ----LRASKLQIQNFW 129
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 2.7
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -2
Query: 311 MLSATCGLQNNLVVPQPAPPCRVLSTS*SPACLKGGRVTNETVATP 174
++ A C + +L+ P P+ VL T +P+ ++ ++N + P
Sbjct: 418 LVKAACHIDKSLISPSPSSQFPVLCTLENPSSIEYNIISNILFSIP 463
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 2.7
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -1
Query: 324 TSVLHAERHMRAAEQPCRSPAGTPMSGSFHQLIASLFERRPRNKRDCGDSSSVLT 160
T+V + + + +Q +P+ + G F +LIA+L ERR + K D+S+ T
Sbjct: 863 TTVDRSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKDNSATPT 917
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 45 SIKHLPSTARRQQHRP*HSTESALRPSHVRKQNVLLNN 158
S+KH+ S R++H + ES ++ QN+ NN
Sbjct: 393 SLKHIVSPGNREKHSLNSTPESIMKKDTKWPQNLAKNN 430
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 225 ASLFERRPRNKRDCGDSSSVLTGCLAVR 142
++L E RP+ K+D +S +T C+A++
Sbjct: 68 STLLEPRPKTKKDVVLKNSNVTECVALK 95
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 264 LGNDKVVLQPACGAQHATRW 323
LGN VLQ CGA + W
Sbjct: 157 LGNKDTVLQADCGAVYKISW 176
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 6.2
Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 194 LLRGLLSNKLAINWW-KEPDMGVP 262
+L LL+NK++++W+ + PD +P
Sbjct: 148 VLNELLANKVSVSWYQRPPDAVIP 171
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 269 PQPAPPCRVLSTS*SPACLKGGRVTNETVATPP 171
P P PP ST P L R + A PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/34 (23%), Positives = 20/34 (58%)
Frame = -1
Query: 255 PMSGSFHQLIASLFERRPRNKRDCGDSSSVLTGC 154
P+S + L+ +F+R P+ + + S++++ C
Sbjct: 265 PISRELNSLLNRIFDRNPKTRITLPELSTLVSNC 298
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 122 LSRSKAKRTAKQPVNTEEESPQSRLLRGL 208
+++ KAK T PV+ EE P+ L L
Sbjct: 33 ITKGKAKVTGNNPVDPIEEFPEGILCENL 61
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 175 LLGIDWLFSSTFCF 134
L+ + WLF ST CF
Sbjct: 44 LVSMSWLFRSTICF 57
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 30 GCLPSSIKHLPSTARRQQHRP*HSTESALRPSHVRK 137
G P +++HL S R + +RPSH+ K
Sbjct: 765 GSYPITVRHLESAIRLSEAFAKMQLSEFVRPSHIDK 800
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,136
Number of Sequences: 5004
Number of extensions: 37503
Number of successful extensions: 141
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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