Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C05
(417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 31 0.25
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 27 4.1
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 27 4.1
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 27 4.1
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 27 4.1
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 27 4.1
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 27 4.1
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 27 4.1
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 27 4.1
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 27 4.1
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 27 4.1
AL023815-5|CAA19428.2| 366|Caenorhabditis elegans Hypothetical ... 27 5.5
AC024204-1|AAF36040.3| 414|Caenorhabditis elegans Hypothetical ... 27 5.5
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 27 7.2
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 27 7.2
U23449-1|AAC24298.3| 488|Caenorhabditis elegans Hypothetical pr... 27 7.2
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 27 7.2
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 27 7.2
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.2
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 27 7.2
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 26 9.5
U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachme... 26 9.5
U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachme... 26 9.5
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 26 9.5
AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related... 26 9.5
AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related ... 26 9.5
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 8 SRRPTLRRVLTKFDKTSSIHRTSTATSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQ 187
+++PT + +KTS+ + ST T D T S + K T + T EE+
Sbjct: 613 TQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTTTTESSTTGKATTPELSTTSEETTT 672
Query: 188 SRL 196
+ L
Sbjct: 673 TEL 675
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 362 RQSYAKPHQQPGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SPAC 216
+Q A QQP P C TC + Q AP C+ S +PAC
Sbjct: 247 QQQCAPQCQQPSAPQCQQCQNTCQQAAPVCQQQCAPQCQQQS---APAC 292
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 362 RQSYAKPHQQPGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SPAC 216
+Q A QQP P C TC + Q AP C+ S +PAC
Sbjct: 247 QQQCAPQCQQPSAPQCQQCQNTCQQAAPVCQQQCAPQCQQQS---APAC 292
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +2
Query: 29 RVLTKFDKTSSIHRTSTATSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQ 187
RV+ +++ TST T+ T E PT + S T +P PQ
Sbjct: 310 RVIVTIPPSTTSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQ 362
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +2
Query: 29 RVLTKFDKTSSIHRTSTATSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQ 187
RV+ +++ TST T+ T E PT + S T +P PQ
Sbjct: 385 RVIVTIPPSTTSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQ 437
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = -2
Query: 380 CLMVKPR--QSYAKPHQQPGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SPAC 216
C P+ Q A QQP P C TC + Q AP C + S +PAC
Sbjct: 236 CQQAAPQCVQQCAPQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTLPS---APAC 289
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = -2
Query: 380 CLMVKPR--QSYAKPHQQPGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SPAC 216
C P+ Q A QQP P C TC + Q AP C + S +PAC
Sbjct: 237 CQQAAPQCVQQCAPQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTLPS---APAC 290
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 95 TLDRERPTALSRSKAKRTAKQPVNTEEESPQSRLLRGLLSNKLAI 229
T++R +PT L +A +K+P + P + RG+L + I
Sbjct: 318 TINRPKPTVLGERQALVASKRPDRVLMQEPSTSSRRGVLKRQHTI 362
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 95 TLDRERPTALSRSKAKRTAKQPVNTEEESPQSRLLRGLLSNKLAI 229
T++R +PT L +A +K+P + P + RG+L + I
Sbjct: 63 TINRPKPTVLGERQALVASKRPDRVLMQEPSTSSRRGVLKRQHTI 107
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 362 RQSYAKPHQQPGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SPAC 216
+Q A QQP P C TC + Q AP C + S +PAC
Sbjct: 160 QQQCAPQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTLPS---APAC 205
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 78 QQHRP*HSTESALRPSHVRKQNVLLNN 158
QQH P H E ++ H R Q +NN
Sbjct: 480 QQHHPMHQVEDQMQRQHQRMQQPNMNN 506
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 78 QQHRP*HSTESALRPSHVRKQNVLLNN 158
QQH P H E ++ H R Q +NN
Sbjct: 480 QQHHPMHQVEDQMQRQHQRMQQPNMNN 506
>AL023815-5|CAA19428.2| 366|Caenorhabditis elegans Hypothetical
protein H28O16.2 protein.
Length = 366
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 5 ISRRPTLRRVLTKFDKTSSIHRTSTATSAMTLDRERPT--ALSRSKAKRTAKQPVNTEEE 178
ISRRP L +L +F + S+ + A + T +++ +A K ++ +E
Sbjct: 288 ISRRPALSGILNRFKTSGSVPDNAIAMINGQFLQYAMTGKSVTMGRASLNEKIDIDLSKE 347
Query: 179 SPQSRLLRG 205
P +++L G
Sbjct: 348 GPATKVLEG 356
>AC024204-1|AAF36040.3| 414|Caenorhabditis elegans Hypothetical
protein Y73B6A.1 protein.
Length = 414
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 54 HLPSTARRQQHRP*HSTESALRPSHV 131
HL + ARRQ HR E+ LR +H+
Sbjct: 119 HLKNNARRQVHREGERAEANLRRAHL 144
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 368 KPRQSYAKPHQQPGLPACCMLSATCGLQN--NLVVPQPAPP 252
K +Q+ A+P QQP PA + A+ +Q VPQ PP
Sbjct: 265 KQQQAQAQPVQQPPNPAPVVQQASAPVQQAPPKPVPQQTPP 305
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 83 TSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQSRLLRGLLSNKLAINWWKE 244
T+ +T+D+ R L KA+ QP++ + P+S LR L + W+K+
Sbjct: 1206 TALLTVDQRRWHDL---KARLKMAQPLHVPPKPPESAKLRCYLYDLTTSRWFKQ 1256
>U23449-1|AAC24298.3| 488|Caenorhabditis elegans Hypothetical
protein K06A1.3 protein.
Length = 488
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 TKFDKTSSIHRTSTATSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQSRLLRGLLSN 217
T T++ T+TAT T ERPT T + T+ +P S + R L S
Sbjct: 303 TTTTSTTTTTSTTTATETPTTTTERPTTTVTQVLDPTTTVTLPTDFPTPDS-IFRLLKSP 361
Query: 218 KLAINW-WKEPD 250
K + N W++ +
Sbjct: 362 KKSNNTVWEDAE 373
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 83 TSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQSRLLRGLLSNKLAINWWKE 244
T+ +T+D+ R L KA+ QP++ + P+S LR L + W+K+
Sbjct: 1184 TALLTVDQRRWHDL---KARLKMAQPLHVPPKPPESAKLRCYLYDLTTSRWFKQ 1234
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 83 TSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQSRLLRGLLSNKLAINWWKE 244
T+ +T+D+ R L KA+ QP++ + P+S LR L + W+K+
Sbjct: 1206 TALLTVDQRRWHDL---KARLKMAQPLHVPPKPPESAKLRCYLYDLTTSRWFKQ 1256
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -2
Query: 362 RQSYAKPHQQPGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SPAC 216
+Q A QQP P C TC + Q AP C S +PAC
Sbjct: 160 QQQCAPQCQQPSAPQCQQCQNTCQQYAPVCQQQCAPQCTFPS---APAC 205
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 362 RQSYAKPHQQPGLPACCMLSATCGLQNNLVVPQPAPPCRVLSTS*SPAC 216
+Q A QQP P C TC + Q AP C + S +PAC
Sbjct: 384 QQQCAPQCQQPSAPQCQQCQNTCQQFAPVCQQQCAPQCTLPS---APAC 429
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 14 RPT-LRRVLTKFDKTSSIHRTSTATSAMTLDRERPTALSRSKAKRTAKQPVNTEEESPQS 190
+PT + VL DK + T T+DR L+ + AK + P++
Sbjct: 741 KPTFIHNVLVVCDKI--LEHCPTRADIWTIDRPMLEGLTNHRNSDIAKAANSLLSRFPEN 798
Query: 191 RLLRGLLSNK 220
LL G+ SN+
Sbjct: 799 DLLAGIFSNR 808
>U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachment
abnormal protein1, isoform a protein.
Length = 309
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 13 SPHAAPGAYQVR*NIFHPPHVDSN 84
SP AP +Y+ +++PPH+ N
Sbjct: 90 SPPHAPPSYETYPEVYYPPHIICN 113
>U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachment
abnormal protein1, isoform b protein.
Length = 315
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 13 SPHAAPGAYQVR*NIFHPPHVDSN 84
SP AP +Y+ +++PPH+ N
Sbjct: 96 SPPHAPPSYETYPEVYYPPHIICN 119
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 63 STARRQQHRP*HSTESALRPSHVRKQNVLLNNQSIP 170
ST + Q+ R +E +PS R+++ L+ QS+P
Sbjct: 7 STRKSQRARDFEESEETEKPSLTRRKSSRLSTQSVP 42
>AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
b protein.
Length = 548
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 104 RERPTALSRSKAKRTAKQPVNTEEESPQ 187
+++P +S+ KA R K+P N ++ +P+
Sbjct: 212 QKKPKKISKFKASRQQKEPENEQKGAPE 239
>AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
a protein.
Length = 660
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 104 RERPTALSRSKAKRTAKQPVNTEEESPQ 187
+++P +S+ KA R K+P N ++ +P+
Sbjct: 212 QKKPKKISKFKASRQQKEPENEQKGAPE 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,779,445
Number of Sequences: 27780
Number of extensions: 235666
Number of successful extensions: 892
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -