Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C04
         (380 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4MIE6 Cluster: Methyltransferase type 11; n=1; Geobact...    35   0.45 
UniRef50_Q54BD2 Cluster: Putative uncharacterized protein; n=1; ...    33   1.4  
UniRef50_Q59K44 Cluster: Putative uncharacterized protein RAD59;...    31   5.5  
UniRef50_Q4HR11 Cluster: Putative uncharacterized protein; n=1; ...    31   9.6  

>UniRef50_A4MIE6 Cluster: Methyltransferase type 11; n=1; Geobacter
           bemidjiensis Bem|Rep: Methyltransferase type 11 -
           Geobacter bemidjiensis Bem
          Length = 298

 Score = 35.1 bits (77), Expect = 0.45
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 99  RK*YTILANVVSEFGYITFYYRF*INFKFMIWVRNIVNLVLRFHSSKRID 248
           +K Y  L+N + EFG     Y F + ++FM   +N+ N+VLR H S  +D
Sbjct: 21  KKFYRKLSNTI-EFGGAFTNYDFLVKYRFMNIFQNVYNVVLRRHPSNILD 69


>UniRef50_Q54BD2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 845

 Score = 33.5 bits (73), Expect = 1.4
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = -1

Query: 272 RGNHLCPLINSFRTVKSQN*IYNITNPNHKFKIYSKTIIECNITEFRNDVCENRILFTRK 93
           +G H   L N    +K+ N   N  N N KF+I++   ++  I +F N+   N ++F+ K
Sbjct: 610 QGYHEMKLNNDMEILKNSN--LNSNNINKKFQIHN---LKKRINQFENNHFRNLLIFSLK 664

Query: 92  KLNFNSLA 69
             NF  ++
Sbjct: 665 STNFKLIS 672


>UniRef50_Q59K44 Cluster: Putative uncharacterized protein RAD59;
           n=1; Candida albicans|Rep: Putative uncharacterized
           protein RAD59 - Candida albicans (Yeast)
          Length = 215

 Score = 31.5 bits (68), Expect = 5.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 224 SQN*IYNITNPNHKFKIYSKTIIECNITEFRN 129
           S+N +YN+ N    F  +S TI++CN+T+  N
Sbjct: 101 SRNILYNLANEVFGFDGWSTTILDCNLTKREN 132


>UniRef50_Q4HR11 Cluster: Putative uncharacterized protein; n=1;
           Campylobacter upsaliensis RM3195|Rep: Putative
           uncharacterized protein - Campylobacter upsaliensis
           RM3195
          Length = 38

 Score = 30.7 bits (66), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 197 NPNHKFKIYSKTIIECNITEFRNDVCENRILF 102
           NP+   KI+S   +  N+ +F +  CEN ILF
Sbjct: 3   NPHFADKIFSYICLSLNVVQFFDTKCENLILF 34


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,376,010
Number of Sequences: 1657284
Number of extensions: 5649581
Number of successful extensions: 10520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10519
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)