Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C04
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   2.3  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   2.3  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   4.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   5.3  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   5.3  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    24   9.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    24   9.3  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    24   9.3  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 212 IYNITNPNHKFKIYSKTIIECNITEFRNDV 123
           I  IT+   + ++Y K  I+C+  EFR  V
Sbjct: 264 IIRITDEPERMQLYMKRNIDCSEDEFREQV 293


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 245 NSFRTVKSQN*IYNITNPNHKFKIYSKTI 159
           N FRT    N I N    + +FK +SKTI
Sbjct: 158 NKFRTTSKYNQIINNIFAHPRFKEFSKTI 186


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 266 YPLSTNLAFTPAFHCLPIVLFLWVTLMD-DDS 358
           +P    L  +PA    P+++F+W  ++  DDS
Sbjct: 531 FPYVLKLLQSPAIELKPVLVFIWARILAVDDS 562


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 LMDTSDYPLSTNLAFTPAFHCLP 316
           +M     P+S NLA TP+F  +P
Sbjct: 462 IMRADSTPISHNLAVTPSFSPIP 484


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 298 SIPLFTYCLIFMGHIN 345
           S+ LFT CL+ M H++
Sbjct: 289 SLELFTVCLVIMAHLH 304


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 366 KYLESSSINVTHKNKTIGKQWNAGVNARLV 277
           ++L + S+ + HK +  G  WN   N RLV
Sbjct: 171 EFLPNISL-IGHKKEGFGLSWNRQQNCRLV 199


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = -1

Query: 212 IYNITNPNHKFKIYSKTIIECN-----ITEFRNDVC 120
           IY++T+ N   K+ S    EC+     + EF N VC
Sbjct: 852 IYDVTDENSHLKLISSLQDECSDVLYLLMEFLNMVC 887


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 227 KSQN*IYNITNPNHKFKIYSKTIIE 153
           + +N +YNI +PN  +++ +K I++
Sbjct: 595 RCRNTLYNILHPNPTYRLTAKQIMK 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,643
Number of Sequences: 5004
Number of extensions: 26673
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)