Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C04
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0155 + 18595193-18596224,18596863-18597264                       27   3.8  
09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495...    27   6.6  
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84...    27   6.6  
03_02_0491 + 8854438-8854657,8854897-8854942,8855268-8855307,885...    24   10.0 

>05_04_0155 + 18595193-18596224,18596863-18597264
          Length = 477

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 197 NPNHKFKIYSKTI-IECNITEFRNDVCENRIL 105
           +P+   K YSK+    CN+T+F++  C N +L
Sbjct: 11  SPSPAVKTYSKSPGYCCNVTQFQSSKCSNLVL 42


>09_02_0146 +
           4953007-4953297,4954105-4954341,4954592-4954669,
           4954991-4955167,4955705-4955761,4955988-4956174,
           4956910-4957055,4957213-4957395,4957860-4957970,
           4959386-4959505,4959596-4959740,4960001-4960164,
           4960816-4960902,4961062-4961390,4963426-4963507,
           4963616-4963746,4963976-4964225,4965112-4965393,
           4966780-4966986
          Length = 1087

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 263 DYPLSTNLAFTPAFHCLPIVLFL 331
           D+PL+ NL+F+ +   LP++L L
Sbjct: 536 DHPLALNLSFSVSLGLLPVILSL 558


>07_01_0113 +
           840866-841574,841687-842210,842391-842840,843541-843699
          Length = 613

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 108 YTILANVVSEFGYITFYYRF*INFKFMIWVRNIVNLVLRFHSSKRI 245
           YT + +   EF  +TFY+ F I     IWV   V  VL F+   RI
Sbjct: 501 YTFIHSSKQEFKPMTFYFGFGIGLVVGIWV---VFCVLLFNKIWRI 543


>03_02_0491 +
           8854438-8854657,8854897-8854942,8855268-8855307,
           8856025-8856090,8856237-8856318,8857036-8857595,
           8857681-8857771,8858300-8858316
          Length = 373

 Score = 23.8 bits (49), Expect(2) = 10.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 110 YDSRKRRFGIRLYYILLSFLN 172
           YD  KRRF +RL+ +     N
Sbjct: 226 YDECKRRFNVRLWKVFTDCFN 246



 Score = 20.6 bits (41), Expect(2) = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 290 FTPAFHCLPIVLFL 331
           FT  F+CLP+   +
Sbjct: 241 FTDCFNCLPVAALI 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,984,344
Number of Sequences: 37544
Number of extensions: 131830
Number of successful extensions: 200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)