Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C04
         (380 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   3.8  
AY578795-1|AAT07300.1|  441|Anopheles gambiae Gbb-60A2 protein.        22   8.7  
AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid transpo...    22   8.7  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    22   8.7  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 252  WTQVITP*ALTWRLRQH-SIVYLLSYFYGSH 341
            W  ++ P    W+LR H  + + LS     H
Sbjct: 908  WAHLVIPDVGAWQLRNHGEVTFHLSQVLSGH 938


>AY578795-1|AAT07300.1|  441|Anopheles gambiae Gbb-60A2 protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 333 HKNKTIGKQWNAGVNARLVLKG*SLV 256
           +KN+T  + W+A V  R ++   SL+
Sbjct: 168 YKNRTTERPWDAIVRGRQIVVRASLI 193


>AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid
           transporter Ag_AAT8 protein.
          Length = 636

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 48  LFIILIYNLCNNKP 7
           +F+ILIYNL   +P
Sbjct: 548 MFVILIYNLVTLEP 561


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
 Frame = +3

Query: 252  WTQVITP*ALTWRLRQHSIV-YLLSYFYGSH 341
            WT  + P    W  R+H  V + LS     H
Sbjct: 917  WTHRVIPDIAAWHFRRHGEVNFHLSQVLSGH 947


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,153
Number of Sequences: 2352
Number of extensions: 6257
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29074284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)