Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C04
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical...    28   2.0  
Z66520-9|CAA91390.2|  335|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    27   6.0  
U61952-2|AAB03160.1|  509|Caenorhabditis elegans Cytochrome p450...    26   7.9  

>AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical
           protein K04F1.7 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 182 FKIYSKTIIECNITEFRNDVCENRILFTRKKLNFNSLA 69
           F I S T  + +I+EF +  CE+R  F  + LN  + A
Sbjct: 22  FNIISLTATQADISEFFDSHCESRCNFLEEHLNSKTKA 59


>Z66520-9|CAA91390.2|  335|Caenorhabditis elegans Hypothetical
           protein F49E12.5a protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 251 MDTSDYPLSTNLAFTPAFHC--LPIVL 325
           M ++DY LS +LA+T  + C  LPI++
Sbjct: 272 MSSADYNLSLSLAYTTPYSCLILPILI 298


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 251 LINSFRTVKSQN*IYNITNPNHKFKIYSKT-IIECNITE-FRNDVCE 117
           LINS R +K       +T+ N  FK+ S T I++ N TE F   V E
Sbjct: 330 LINSLRVIKKVPKDMFLTDFNSCFKVLSSTSIVDYNETELFETSVVE 376


>U61952-2|AAB03160.1|  509|Caenorhabditis elegans Cytochrome p450
           family protein 33E2 protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 175 ILNL*FGFVIL*I*FCDFTVLKELINGHK*LPLEH*PGVYASIPLFTYCLIFMGHINGRR 354
           I NL FG+        +F  LKE +N H  L  +   G+    P   Y   F G+ NG  
Sbjct: 176 INNLLFGYRYDETNIAEFLDLKEKLNNHFQLAAKPIGGLIGMNPWLGYFPYFSGYKNGLF 235

Query: 355 FQI 363
           +++
Sbjct: 236 YEL 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,694,243
Number of Sequences: 27780
Number of extensions: 141892
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)