Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C03
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   189   2e-49
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   189   2e-49
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   4e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.18 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.2  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   6.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.7  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  189 bits (460), Expect = 2e-49
 Identities = 86/108 (79%), Positives = 100/108 (92%)
 Frame = +1

Query: 10  WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 189
           +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++
Sbjct: 36  YKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVD 95

Query: 190 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRS 333
           ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK++PR+
Sbjct: 96  ENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  189 bits (460), Expect = 2e-49
 Identities = 86/108 (79%), Positives = 100/108 (92%)
 Frame = +1

Query: 10  WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 189
           +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++
Sbjct: 36  YKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVD 95

Query: 190 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRS 333
           ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK++PR+
Sbjct: 96  ENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +1

Query: 31  GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 210
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 211 AGFGRKGHAVGDIPGVRFKVVK 276
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 311  SLYRARSDTFATLTTLNLTPGMSPTAWP 228
            S Y+ + DT+AT  TLN      PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -3

Query: 311 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 183
           ++Y + + +F   T ++++ G S     L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 160 PRDGCLNHIEENDEVLVAGFGRKGHAVG 243
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/86 (19%), Positives = 46/86 (53%)
 Frame = -3

Query: 380 LPAAAAGHSLITM*TYDLGLSFFSLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNT 201
           +P +++     ++ T   G+S  S+      TF++++++  +   SP++  L  + ++ +
Sbjct: 545 IPTSSSSDFSSSITTISSGISSSSI----PSTFSSVSSILSSSTSSPSSTSLSISSSSTS 600

Query: 200 SSFSSMWLRQPSRGTNAVTFLPFLMS 123
           S+FSS     PS  +++++    ++S
Sbjct: 601 STFSSASTSSPSSISSSISSSSTILS 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,342
Number of Sequences: 5004
Number of extensions: 37125
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)