Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C03
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 197 3e-51
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 197 3e-51
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 111 3e-25
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.54
06_02_0197 - 12912818-12913411,12913505-12913732 30 0.94
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 28 3.8
06_03_0370 - 19978462-19978800,19982435-19982591,19982683-199829... 27 5.0
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 6.6
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 27 8.7
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 8.7
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 27 8.7
06_03_1146 - 28004896-28005554,28005664-28005844 27 8.7
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 197 bits (481), Expect = 3e-51
Identities = 90/108 (83%), Positives = 100/108 (92%)
Frame = +1
Query: 10 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 189
WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE
Sbjct: 36 WK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIE 94
Query: 190 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRS 333
ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK++PRS
Sbjct: 95 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 197 bits (481), Expect = 3e-51
Identities = 90/108 (83%), Positives = 100/108 (92%)
Frame = +1
Query: 10 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 189
WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE
Sbjct: 206 WK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIE 264
Query: 190 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRS 333
ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK++PRS
Sbjct: 265 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 194 bits (472), Expect = 3e-50
Identities = 88/106 (83%), Positives = 98/106 (92%)
Frame = +1
Query: 10 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 189
WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE
Sbjct: 36 WK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIE 94
Query: 190 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRP 327
ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKK++P
Sbjct: 95 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 111 bits (266), Expect = 3e-25
Identities = 50/69 (72%), Positives = 57/69 (82%)
Frame = +1
Query: 10 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 189
WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+
Sbjct: 107 WK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIK 165
Query: 190 ENDEVLVAG 216
EN+ V G
Sbjct: 166 ENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 196 DEVLVAGFGRKGHAVGDIPGVRFKVVK 276
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.54
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 278 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 147
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 121 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 23
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 436 FLLCSQFTHYKMYTYKQDASRRRQRVTH*SQCKRMTWACPSFLCTELEATR 284
FL+C TH +Y Y + + ++ Q + W CPS LC + R
Sbjct: 506 FLVCGH-THC-LYKYYHISCLKATQIASDKQLDKPCWYCPSCLCRVCHSDR 554
>06_03_0370 -
19978462-19978800,19982435-19982591,19982683-19982917,
19983029-19983239,19985597-19985700,19985871-19985957,
19986225-19986354
Length = 420
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 187 EENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRSYVYIVI 351
E+N E L+ R GD P + ++V A+++LL + ++ +DRP + +++
Sbjct: 316 EKNPERLIRSSLRISVG-GDAPHLMGQIVGCAHIALLCVQEDPEDRPSMWDVVLM 369
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 272 TTLNLTPGMSPTAWPLRPNPATNTSS 195
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 273 NHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHECCHFLAVLNELY 118
+H+K V NS+ F I+LL+ + I C +L+V E Y
Sbjct: 376 SHMKEQWEQVHNSIGFVFSQQGIRDILLLSYYDLPINLKTCLLYLSVFPEDY 427
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 326 GLSFFSLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNA- 150
GLS F Y +S +F +L +P + NP + W R+ S + A
Sbjct: 112 GLSNF--YAGKSKSFTSLAEATASPAAAANELAKPENPFNKRRRILATWSRRASCSSLAT 169
Query: 149 VTFLPFLMS 123
T+LP L++
Sbjct: 170 ATYLPPLLA 178
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 265 KVVKVANVSLLALYKEKKDRPRSYVYIVISE*PAAAAGRRLVYKCTFYNV 414
K+V+++ LL+ YKE + + S P R + YK F NV
Sbjct: 580 KIVRISEDRLLSPYKELSVANKLLLISYNSSRPRLIPDRNITYKTAFKNV 629
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 257 TPGMSPTAWPLRPNPATNTSSFSS 186
TP SP+ P+ P PA TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,111
Number of Sequences: 37544
Number of extensions: 285509
Number of successful extensions: 783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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