Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C03
(436 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 214 1e-55
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 214 1e-55
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 214 1e-55
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 118 1e-26
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 54 2e-07
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 54 2e-07
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 54 2e-07
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 214 bits (522), Expect = 1e-55
Identities = 102/107 (95%), Positives = 104/107 (97%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRS 333
NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK+RPRS
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 214 bits (522), Expect = 1e-55
Identities = 102/107 (95%), Positives = 104/107 (97%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRS 333
NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK+RPRS
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 214 bits (522), Expect = 1e-55
Identities = 102/107 (95%), Positives = 104/107 (97%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEE
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRS 333
NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK+RPRS
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 118 bits (283), Expect = 1e-26
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +1
Query: 154 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPR 330
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KK+RPR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 276
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 276
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 276
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 276
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 276
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +1
Query: 13 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 192
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 193 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 276
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,358,503
Number of Sequences: 237096
Number of extensions: 1622888
Number of successful extensions: 2855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2851
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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