Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C03
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   208   1e-54
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    52   1e-07
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   4.4  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   4.4  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  208 bits (509), Expect = 1e-54
 Identities = 94/108 (87%), Positives = 103/108 (95%)
 Frame = +1

Query: 10  WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 189
           WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +E
Sbjct: 36  WKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVE 95

Query: 190 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKDRPRS 333
           ENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KK+RPRS
Sbjct: 96  ENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 32/76 (42%), Positives = 46/76 (60%)
 Frame = +1

Query: 1   ARGWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLN 180
           AR    +   G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  +
Sbjct: 62  ARSKDKSAISGYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--H 118

Query: 181 HIEENDEVLVAGFGRK 228
           +++E+ +VLV G GR+
Sbjct: 119 NLQEHSQVLVKG-GRR 133


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 148 TAFVPRDGCLNHIEEN 195
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 291 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 154
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 291 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 154
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 172 CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 279
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,953,230
Number of Sequences: 27780
Number of extensions: 226316
Number of successful extensions: 510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)