Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C02
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   0.85 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 54  SCSIVIR*LCHQ*IL-LKGIMSRYGDCKIYVGDLGNNASKPELEDAF 191
           SC ++ R   +Q I  L  I +RY D    V    N A+ PEL + F
Sbjct: 313 SCLVIDRETFNQLISSLDEIRTRYKDSSSSVEGWENRATIPELNEEF 359


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 376 LRRGLGYHHVH-MMTAAMIVV 435
           LRR LGYH  H  + +A+IVV
Sbjct: 209 LRRRLGYHLFHTYIPSALIVV 229


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -3

Query: 363 HNLVHH*TSLRERGVHILYVHLNLGWRPQRHEDLQILQKRNRVDFWPPIH-----FSKDH 199
           H+ +HH   L ++  +++Y + +   R Q H + +IL++  + D+   +H     F  DH
Sbjct: 73  HHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKILREL-QTDYDRRLHDNSPSFLSDH 131

Query: 198 SK 193
           S+
Sbjct: 132 SR 133


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -3

Query: 168 CWRCFPNRQHRFCSRHSAT*CL 103
           CW CF   Q++       T C+
Sbjct: 606 CWHCFNCTQYQIRDHKDVTQCI 627


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 219  IHFSKDHSKKMHLQVL 172
            + FSK+  K+ HLQ++
Sbjct: 1030 VDFSKEDGKEHHLQIM 1045


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 287 HPRFRWTYNMWTPRSRRDV*WWT 355
           HP     +N W P  R  +  WT
Sbjct: 466 HPYDHLVWNSWMPSIRGAIQQWT 488


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 426 HSSGHHMDVVVAETAAED 373
           H   H  D+VV   AA+D
Sbjct: 211 HRGAHITDIVVLVVAADD 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,301
Number of Sequences: 438
Number of extensions: 2412
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)