Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C01
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 44 1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 2e-05
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 42 5e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 1e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 3e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 7e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 38 9e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 9e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 37 0.002
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.005
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.005
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.005
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 34 0.011
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 34 0.014
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.025
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.033
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.057
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.075
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.099
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.17
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 30 0.17
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.40
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 0.70
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 28 0.92
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 1.2
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.2
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 2.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 2.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.1
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 2.1
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 4.9
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 6.5
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 8.6
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 8.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 8.6
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 8.6
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 44.0 bits (99), Expect = 1e-05
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKN-----FGFIKLDYRVNAETAKRE 465
+ +YI NL ++TE E +LF +GE L L K++N FGF+ A+ A E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 466 LDGKMRNGRTLRV 504
L+ K G+ L V
Sbjct: 321 LNDKEYKGKKLYV 333
Score = 26.6 bits (56), Expect = 2.1
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKE----KNFGFIKLDYR--VNAETAKREL 468
LY+G L VTE + LF+ G A + + ++ ++ G+ +++ + E A EL
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 469 DGKMRNGRTLRV 504
+ + GR R+
Sbjct: 142 NYTLIKGRPCRI 153
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETAKRE 465
RL++ NLT ED++++LF P+G+ ++ + N K F +I +A A E
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 466 LDGKMRNGRTLRV 504
LD K GR L V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFL 396
L + N + +E+ +LFSP+GE + +
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRILI 537
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 41.9 bits (94), Expect = 5e-05
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRV 441
P I +K R+ L++G +T V E ++++F +G L LN GF+K+ R
Sbjct: 394 PTIPPDSIKVYSRT-LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRD 452
Query: 442 NAETAKRELDGKMRNGRTLRVR 507
AE A+ ++ T+R +
Sbjct: 453 AAEKAQVAMENVPFADTTIRTK 474
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 40.7 bits (91), Expect = 1e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKE----KNFGFIKLDYRVNAET 453
N S L++ NL +D++ N FS G + A + N E + +GF+ +A+
Sbjct: 2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Query: 454 AKRELDGKMRNGRTLRV 504
A +EL K +GR LR+
Sbjct: 62 AAKELKNKKLHGRILRL 78
Score = 27.1 bits (57), Expect = 1.6
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 283 VKFNGRSRLYIGNLTNDVTEDE-IQNLFSPYGESAELFL-----NKEKNFGFIKLDYRVN 444
++ + R RL I NL + + + ++ FS +G+ E+ + + F F+ + R
Sbjct: 101 IRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKA 160
Query: 445 AETAKRELDGKMRNGRTLRV 504
AE A L+G +GR + V
Sbjct: 161 AEEAMNSLNGTEIDGRPIAV 180
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 39.5 bits (88), Expect = 3e-04
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 253 LDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 417
LD P ++ + +YIGNL D+ ED+I +FS +GE ++ L ++K G
Sbjct: 15 LDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETG 69
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 3e-04
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDG 474
S +++G L+ V+E+E++ LF +GE + + K GF++ R +AE A +L G
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQG 360
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.3 bits (85), Expect = 7e-04
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL-FLNKEKN----------FGFIKLDYRVNAET 453
+Y+GNL + ++ LF P+G ++ L+++KN F FI + + +A+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 454 AKRELDGKMRNGRTLRV 504
A L+G G TL+V
Sbjct: 82 AIASLNGSSFQGNTLKV 98
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 37.9 bits (84), Expect = 9e-04
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 283 VKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFI 423
V+ +G R +++GNL N +TEDEI+ P+G ++ + E+N F+
Sbjct: 199 VQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFV 246
Score = 30.7 bits (66), Expect = 0.13
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 295 GRSR-LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETA 456
G SR +YIGN + +T + ++ F +GE + +EKN F+ +A A
Sbjct: 411 GASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINA 465
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQN 357
P + + ++ G +YIGN+ D T +EI N
Sbjct: 310 PVLQKPDLIMTGNRTVYIGNIHADTTIEEICN 341
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 37.9 bits (84), Expect = 9e-04
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNK-----EKNFGFIKLDYRVNAETAKR 462
++ +++GNL VTE + N F P+GE + L++ ++++ F++ D +A+ A
Sbjct: 5 KATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAME 64
Query: 463 ELDGKMRNGRTLRV 504
++ + R +RV
Sbjct: 65 NMNYSILCDRCIRV 78
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN----KEKNFGFIKLDYRVNAET 453
+ + ++YI NL ++ ED++ L P+G+ S +L N K F F + +AE
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 454 AKRELDGKMRNGRTLRVR 507
A LDGK G L +
Sbjct: 367 AISGLDGKDTYGNKLHAQ 384
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.5 bits (78), Expect = 0.005
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 274 QSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAEL--FLNKEKNFGFIKLDYRV 441
+S + GR LY+ N+ V E +++ F YG ES + N+ K FG++ +
Sbjct: 749 RSGAVYEGRE-LYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQ 807
Query: 442 NAETAKRELDGKMRNGRTLRV 504
+AE A GK R L V
Sbjct: 808 DAENA-LSAAGKQLGNRVLNV 827
Score = 29.5 bits (63), Expect = 0.30
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 178 QDNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSE--VKFNGRSRLYIGNLTNDVTEDEI 351
+DN K ++ ++ + + L DL +I E V+ + + LY+ N E +I
Sbjct: 623 EDNQKDVKVAQIEFSETSEVLAAKTRDLKSIRGHEISVQIHVDTNLYVTNFPPTYDELDI 682
Query: 352 QNLFSPYGESAEL 390
LFS YG ++
Sbjct: 683 TKLFSAYGNVVDV 695
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMRN 486
L + N+ V E +++LF YG+ + L+ E ++ +A A L+G
Sbjct: 876 LGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIG 935
Query: 487 GRTLRV 504
GR L +
Sbjct: 936 GRLLHI 941
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGK 477
L++GNL + V+ + FS YG + + + K+ F+ D A+ EL+GK
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGK 645
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.5 bits (78), Expect = 0.005
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL-----NKEKNFGFIKLDYRVNAETAKREL 468
RL++GNL NDV ++ + FS Y + + K + FGF+ A RE
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 469 DGKMRNGRTLRV 504
+GK R +++
Sbjct: 91 NGKYIGSRPVKL 102
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 34.3 bits (75), Expect = 0.011
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKE------KNFGFIKLDYRVNAETAKREL 468
L + NL++D E+E+++LF +G ++L K+ K F F+ R A A+ L
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 469 DGKMRNGRTLR 501
DG N LR
Sbjct: 264 DGYGWNNLILR 274
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.9 bits (74), Expect = 0.014
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKM 480
+++G L ++++E ++Q F P+G + + K GF++ + AE A + G +
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGAL 356
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.1 bits (72), Expect = 0.025
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKE------KNFGFIKLDYRVNAETAKREL 468
L++ + + + EDE+Q +FS +G + + +E + FGF+ A +A L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 469 DGKMRNGRTLRVR 507
+ + GR L V+
Sbjct: 163 NSQEFYGRVLNVQ 175
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.7 bits (71), Expect = 0.033
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNKE----KNFGFI 423
+++++G + D TE+E +N F+ +G A L ++K+ + FGF+
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFV 293
Score = 28.3 bits (60), Expect = 0.70
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI--KLDYRVNAETAK 459
+++IG L + T+D +++ F +GE + + + + FGF+ K VN +K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 460 -RELDGKM 480
LDGK+
Sbjct: 224 EHHLDGKI 231
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.9 bits (69), Expect = 0.057
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +1
Query: 331 DVTEDEIQNLFSPYGESAELFLNKEKNFGFIK----LDYRVNAETAKRELDGK 477
+ TE+++++LF+ +G L LN ++ G++K ++Y E A++ +D K
Sbjct: 20 EATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY-ATLEQAQKAVDEK 71
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.5 bits (68), Expect = 0.075
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYR 438
LP + + + +Y ++++ +T +E++ + YGE + K ++ GF+
Sbjct: 486 LPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNI 545
Query: 439 VNAETA 456
NA A
Sbjct: 546 SNAMKA 551
Score = 31.1 bits (67), Expect = 0.099
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFI 423
LP Q+ SR ++IGNL + E EI+ F +G+ + + +KN F+
Sbjct: 284 LPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFV 339
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.1 bits (67), Expect = 0.099
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGK 477
+RL++G + T +++ + F YG+ + L FGF++++ +A + GK
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL--MNGFGFVEVEDARDARDIVNDFQGK 60
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.3 bits (65), Expect = 0.17
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELF 393
S +Y+GN+ + ++++EI FS YG+ +F
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
Score = 29.1 bits (62), Expect = 0.40
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +1
Query: 301 SRLYIGNLTNDVT--EDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETA 456
S LY+ NL + V + ++++LFSP+G L K +GF+ A A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 457 KRELDGKM 480
K L+G M
Sbjct: 442 KDTLNGMM 449
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.17
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 310 YIGNLTNDVTEDEIQNLFSPYGESAELFLN----KEKNFGFIKLDYRVNAETAKRELDGK 477
++GNL+ D+TE+++ + F S L ++ + + FG+++ + + +A L G+
Sbjct: 97 HVGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTERSRGFGYVEFE-TADTLSAALALSGE 155
Query: 478 MRNGRTLRV 504
GR +R+
Sbjct: 156 DLMGRPVRI 164
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.40
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEK 408
+Y+GNL+ TE++I LFS GE + + ++
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDR 67
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 0.70
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETAKR-- 462
+++GNL+ + TED++ F G+ + L + K FG++ + ++AK+
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS---DIDSAKKCV 424
Query: 463 ELDGKMRNGRTLRV 504
E++G GR R+
Sbjct: 425 EMNGHFIAGRPCRL 438
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 27.9 bits (59), Expect = 0.92
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -2
Query: 426 FYKTKVFLLVQKQFSRFAVRRE*VLDFIFSDIISEVTNIQTAPTVELNFRLIYGR*IKQW 247
F K +F +Q F + +R DFI + ++ +++ TA +V +RL G+ I+ +
Sbjct: 445 FLKAPLFQTLQYLFRLYPYQR----DFIIEESLTNFSHLPTARSVSRTYRLSNGKSIQYY 500
Query: 246 PC*IFQLI 223
+LI
Sbjct: 501 STLFVRLI 508
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = +1
Query: 229 LKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEK 408
L + +LD I K N R+ +T+ +I NL PYGE ++ ++
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPYITKKDIDNLLEPYGEVEDVTEIPDQ 197
Query: 409 NFGFIKLDYRVNAETA 456
+ ++ YR A A
Sbjct: 198 SAFLVRFVYRDEAIAA 213
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGK 477
LY+ NL + I LFS YG ++++ N + + +A A+ L +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALHNR 58
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 2.1
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE------SAELFLNKEKNFGFIKLDYRVNAETAKREL 468
+Y+GN+ VT +E+Q+ F+ G + F K F +I+ A L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-L 115
Query: 469 DGKMRNGRTLRV 504
+G M + R L+V
Sbjct: 116 NGSMLHERPLKV 127
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETAKREL 468
+++GNL + E+ + F G + + N K F +I+ + + A
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 469 DGKMRNGRTLRV 504
+ KM GRTLR+
Sbjct: 332 EKKMPEGRTLRI 343
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 298 RSRL-YIGNLTNDVTEDEIQNLFSPYG 375
RS++ ++ LTNDVT+ E+++ F+ +G
Sbjct: 242 RSKIVHVAGLTNDVTQLELESWFTNHG 268
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 121 FLRLVLDQIVCFLVSDLAHLGPKTRPSADFGCSD 20
FL+LV D++ FL + + PK+RPS+ D
Sbjct: 580 FLQLVCDEVPPFLDGNRDGVHPKSRPSSKVNLVD 613
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 473 PSNSRFAVSAFTL*SNFIKPKFFSLFKNNSADSP*GENKFWISSS 339
P N +VS F N FSL+ N P +N W+++S
Sbjct: 282 PGNPNPSVSLFVADLNSNASSNFSLWHNEPLAEPVVQNVLWVNTS 326
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFS 366
+Y+GNL +E+E++ LFS
Sbjct: 428 IYVGNLPPSTSEEELKVLFS 447
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAE 387
+YI L DVT DEI+ +F G A+
Sbjct: 112 VYIQGLPLDVTVDEIEEVFKKCGVIAK 138
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 356 TYSLLTANRLNCF*TRRKTLV 418
TY NRL+CF T++ TL+
Sbjct: 28 TYLNKEPNRLHCFYTKKSTLI 48
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 148 FAVDYVVVHFLRLVLDQIVCFLVSDLAH 65
FA+D+++ H + L I+C D+ H
Sbjct: 1709 FAMDFILSHCILFSLTPILCIPFIDIPH 1736
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 187 MKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNG 297
+ P+Q+ EM L N L+ L L++PA Q +++ G
Sbjct: 230 LMPVQKCEMHLLNILEQLQPDCLEVPA-GQRQLRCTG 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.136 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,352
Number of Sequences: 5004
Number of extensions: 32909
Number of successful extensions: 146
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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