Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_C01
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 84 5e-17
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 84 5e-17
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 57 8e-09
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 51 6e-07
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 51 6e-07
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 51 6e-07
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 49 2e-06
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 47 7e-06
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 47 7e-06
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 46 1e-05
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 46 1e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 46 1e-05
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 44 6e-05
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 44 6e-05
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 44 6e-05
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 44 6e-05
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 43 1e-04
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 42 2e-04
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 42 2e-04
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 42 2e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 42 2e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 42 2e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 42 2e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 41 4e-04
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 41 4e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 41 6e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 41 6e-04
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 40 0.001
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 39 0.002
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 39 0.002
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 38 0.006
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 38 0.006
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 38 0.006
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 37 0.007
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 37 0.010
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 36 0.013
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 36 0.017
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 36 0.022
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 36 0.022
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 35 0.039
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 35 0.039
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 35 0.039
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 35 0.039
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 35 0.039
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 34 0.052
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 34 0.052
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 34 0.052
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.090
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 33 0.090
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.12
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.12
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.16
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 32 0.27
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.27
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 32 0.27
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 32 0.27
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 31 0.63
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.63
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 31 0.63
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 30 0.84
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 1.1
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 30 1.1
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 30 1.1
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 1.1
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 1.1
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 1.1
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 29 1.5
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 29 1.5
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 29 1.5
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 29 1.5
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 29 1.5
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 29 1.5
U88177-7|AAB42288.1| 339|Caenorhabditis elegans Hypothetical pr... 29 1.9
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 29 2.6
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 29 2.6
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 28 4.5
AL110501-3|CAB54506.1| 199|Caenorhabditis elegans Hypothetical ... 28 4.5
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 28 4.5
Z83106-6|CAB05497.2| 339|Caenorhabditis elegans Hypothetical pr... 27 7.8
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 84.2 bits (199), Expect = 5e-17
Identities = 38/74 (51%), Positives = 56/74 (75%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRE 465
KF GR RL++GNL N+V E E++ LFSP+G+ AE +L+ K F F++LD R +AE+AK
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRLDTRAHAESAKEA 169
Query: 466 LDGKMRNGRTLRVR 507
+DG++ +GR +RVR
Sbjct: 170 IDGRIIHGRQVRVR 183
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 84.2 bits (199), Expect = 5e-17
Identities = 38/74 (51%), Positives = 56/74 (75%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRE 465
KF GR RL++GNL N+V E E++ LFSP+G+ AE +L+ K F F++LD R +AE+AK
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRLDTRAHAESAKEA 169
Query: 466 LDGKMRNGRTLRVR 507
+DG++ +GR +RVR
Sbjct: 170 IDGRIIHGRQVRVR 183
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 56.8 bits (131), Expect = 8e-09
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKL 429
KF GR RL++GNL N+V E E++ LFSP+G+ AE +L+ K F F++L
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRL 157
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/63 (38%), Positives = 41/63 (65%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKM 480
+R+YIG LT+ V+E +I++ F YG+ ++ L + FGF++ D + +AE A +L+GK
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 481 RNG 489
G
Sbjct: 61 LGG 63
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/63 (38%), Positives = 41/63 (65%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKM 480
+R+YIG LT+ V+E +I++ F YG+ ++ L + FGF++ D + +AE A +L+GK
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 481 RNG 489
G
Sbjct: 61 LGG 63
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/63 (38%), Positives = 41/63 (65%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKM 480
+R+YIG LT+ V+E +I++ F YG+ ++ L + FGF++ D + +AE A +L+GK
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 481 RNG 489
G
Sbjct: 61 LGG 63
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/65 (30%), Positives = 41/65 (63%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMRN 486
+Y+GN++ T+ ++++LFS YG+ AE+ + K + + F++ + + A A E++GK
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMA 298
Query: 487 GRTLR 501
G +R
Sbjct: 299 GNQVR 303
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETAKREL 468
+++G+L+ DV+ + +++ F+ +GE +E + K K +GF+ + NAE A +
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 469 DGKMRNGRTLR 501
+GK R +R
Sbjct: 197 NGKWIGKRAVR 207
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 47.2 bits (107), Expect = 7e-06
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEK------NFGFIKLDYRVNAET 453
NG + L I NL+ T ++++ F YG+ ++ + ++K FGF++ R +AE
Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75
Query: 454 AKRELDGKMRNGRTLRV 504
A DGK+ +GR LRV
Sbjct: 76 ALDRTDGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 47.2 bits (107), Expect = 7e-06
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEK------NFGFIKLDYRVNAET 453
NG + L I NL+ T ++++ F YG+ ++ + ++K FGF++ R +AE
Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75
Query: 454 AKRELDGKMRNGRTLRV 504
A DGK+ +GR LRV
Sbjct: 76 ALDRTDGKLVDGRELRV 92
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +1
Query: 292 NGRSR--LYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNA 447
N RS+ +++GN++ DV+ED I+++FS G + + K K +GFI+ A
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTA 72
Query: 448 ETAKRELDGKMRNGRTLRV 504
E A R L+G +GR LRV
Sbjct: 73 EVAIRNLNGYELSGRILRV 91
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKEKNFGFIKLDYRVNAETAKRELDGK 477
++Y+GNL DV E E++++F YG + ++ + F F++ + +AE A R DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 478 MRNGRTLRV 504
+GR +RV
Sbjct: 70 EFDGRRIRV 78
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKEKNFGFIKLDYRVNAETAKRELDGK 477
++Y+GNL DV E E++++F YG + ++ + F F++ + +AE A R DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 478 MRNGRTLRV 504
+GR +RV
Sbjct: 70 EFDGRRIRV 78
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 423
P QS++ +++G+L+++V +++ F P+G+ ++ + K K +GF+
Sbjct: 9 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 68
Query: 424 KLDYRVNAETAKRELDGKMRNGRTLR 501
R AE A +++G+ RT+R
Sbjct: 69 SYPKREEAERAIEQMNGQWLGRRTIR 94
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/65 (29%), Positives = 39/65 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMRN 486
+Y+GN+ + +TEDEI+ F+ +G E+ + K + + F+K D + A A +++ +
Sbjct: 130 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVG 188
Query: 487 GRTLR 501
G+ +R
Sbjct: 189 GQLVR 193
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 423
P QS++ +++G+L+++V +++ F P+G+ ++ + K K +GF+
Sbjct: 19 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 78
Query: 424 KLDYRVNAETAKRELDGKMRNGRTLR 501
R AE A +++G+ RT+R
Sbjct: 79 SYPKREEAERAIEQMNGQWLGRRTIR 104
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/65 (29%), Positives = 39/65 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMRN 486
+Y+GN+ + +TEDEI+ F+ +G E+ + K + + F+K D + A A +++ +
Sbjct: 140 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVG 198
Query: 487 GRTLR 501
G+ +R
Sbjct: 199 GQLVR 203
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 423
P QS++ +++G+L+++V +++ F P+G+ ++ + K K +GF+
Sbjct: 122 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 181
Query: 424 KLDYRVNAETAKRELDGKMRNGRTLR 501
R AE A +++G+ RT+R
Sbjct: 182 SYPKREEAERAIEQMNGQWLGRRTIR 207
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/65 (29%), Positives = 39/65 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMRN 486
+Y+GN+ + +TEDEI+ F+ +G E+ + K + + F+K D + A A +++ +
Sbjct: 243 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVG 301
Query: 487 GRTLR 501
G+ +R
Sbjct: 302 GQLVR 306
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG---ESAELFLNKEKNFGFIKLDYRVNAETAKRELDGK 477
LY+GNL + VTED I LF+ G ++ +F + F++ A A + ++ +
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMNKR 107
Query: 478 MRNGRTLRV 504
+ R ++V
Sbjct: 108 LLLDREMKV 116
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 44.0 bits (99), Expect = 6e-05
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 423
P QS++ +++G+L+++V +++ F P+G+ ++ + K K +GF+
Sbjct: 90 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 149
Query: 424 KLDYRVNAETAKRELDGKMRNGRTLR 501
R AE A +++G+ RT+R
Sbjct: 150 SYPKREEAERAIEQMNGQWLGRRTIR 175
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/65 (29%), Positives = 39/65 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMRN 486
+Y+GN+ + +TEDEI+ F+ +G E+ + K + + F+K D + A A +++ +
Sbjct: 211 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVG 269
Query: 487 GRTLR 501
G+ +R
Sbjct: 270 GQLVR 274
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
LY+GNL + VTED I LF+ G
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIG 70
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAET 453
N + LY+G T DVTE + F P+G+ + + K + FGF++ D +A
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 454 AKRELDGKMRNGRTLRV 504
A ++ G+T+RV
Sbjct: 68 AIDNMNESELFGKTIRV 84
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFL-NKEKNFGFIKLDYRVNAETAKRELDGK 477
+++Y+G L +D T E++ +F +G ++++ + F F++ D +AE A R LDG
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 478 MRNGRTLRV 504
G RV
Sbjct: 63 RICGVRARV 71
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFL-NKEKNFGFIKLDYRVNAETAKRELDGK 477
+++Y+G L +D T E++ +F +G ++++ + F F++ D +AE A R LDG
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 478 MRNGRTLRV 504
G RV
Sbjct: 63 RICGVRARV 71
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFL-NKEKNFGFIKLDYRVNAETAKRELDGK 477
+++Y+G L +D T E++ +F +G ++++ + F F++ D +AE A R LDG
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 478 MRNGRTLRV 504
G RV
Sbjct: 63 RICGVRARV 71
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN------KEKNFGFIKLDYRVNAETAKR 462
SR+Y+G+++ ++ ED ++ F P+G + ++ K F F++ + A A+
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 463 ELDGKMRNGRTLRV 504
++G+M GR L+V
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
P ID + R+Y+ ++ D++E +++++F +GE
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGE 232
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN------KEKNFGFIKLDYRVNAETAKR 462
SR+Y+G+++ ++ ED ++ F P+G + ++ K F F++ + A A+
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 463 ELDGKMRNGRTLRV 504
++G+M GR L+V
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNK------EKNFGFI 423
P ID + R+Y+ ++ D++E +++++F +GE + L + + FG++
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYL 253
Query: 424 KLDYRVNAETAKRELDGKMRNGRTLRV 504
+ + + A ++ G+ LRV
Sbjct: 254 EFNNLTSQSEAIAGMNMFDLGGQYLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN------KEKNFGFIKLDYRVNAETAKR 462
SR+Y+G+++ ++ ED ++ F P+G + ++ K F F++ + A A+
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 463 ELDGKMRNGRTLRV 504
++G+M GR L+V
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNK------EKNFGFI 423
P ID + R+Y+ ++ D++E +++++F +GE + L + + FG++
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYL 253
Query: 424 KLDYRVNAETAKRELDGKMRNGRTLRV 504
+ + + A ++ G+ LRV
Sbjct: 254 EFNNLTSQSEAIAGMNMFDLGGQYLRV 280
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNKE----KNFGFIKLDYRVNAETAKREL 468
+Y+GN+ TE+EI N F+ G + + ++E + F F++ A+ A +L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 469 DGKMRNGRTLRV 504
+G NGR LRV
Sbjct: 68 NGVAFNGRNLRV 79
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 41.1 bits (92), Expect = 4e-04
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 298 RSRLYIGNLTNDV-TEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDG 474
R+R++IGN+ + T D+I LF P+G+ + ++ FGF++ + +A+ + R L+G
Sbjct: 82 RARVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQGFGFVQFNEAGSADESCRSLNG 141
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNKE----KNFGFIKLDYRVNAET 453
+G +Y+GN TE+E+ N FS G+ + + ++E + F FI+ +A+
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 454 AKRELDGKMRNGRTLRV 504
A +++G NGR LRV
Sbjct: 62 AVEQMNGAEFNGRPLRV 78
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 423
P ++S+ + + +++G+L +++ +++ F +GE +E + NK K +GF+
Sbjct: 119 PGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query: 424 KLDYRVNAETAKRELDGKMRNGRTLR 501
R +AE A E++G RT+R
Sbjct: 179 SYPRREDAERAIDEMNGAWLGRRTIR 204
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMRN 486
+Y+GN+ N + EDEI+ F +G E+ K + + F+K + + +A A +++
Sbjct: 258 VYVGNIAN-LGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMNNADIG 316
Query: 487 GRTLR 501
G+ +R
Sbjct: 317 GQIVR 321
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/58 (29%), Positives = 36/58 (62%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGK 477
R+YIG L N ++ ++++ F YG+ +++ + + FGF+ + +A+ A +L+GK
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIM--KNGFGFVDFQDQRDADDAVHDLNGK 58
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAK 459
+++ N+ + TED++ + FS YG+ + LN ++ GF+K V ET K
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQK 107
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNK--EKNFGFIKLDYRVNAETAKREL 468
+R+Y+ N+ E ++ +F YG S E+ N K FGF+ LD + E A+ L
Sbjct: 51 NRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAAL 110
Query: 469 DGKMRNGRTLRVR 507
GR + VR
Sbjct: 111 HESHVQGRIIEVR 123
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNK--EKNFGFIKLDYRVNAETAKREL 468
+R+Y+ N+ E ++ +F YG S E+ N K FGF+ LD + E A+ L
Sbjct: 51 NRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAAL 110
Query: 469 DGKMRNGRTLRVR 507
GR + VR
Sbjct: 111 HESHVQGRIIEVR 123
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMR 483
RLY+G + + E +++ YG+ + + + F F+ + +AE A +LDGK
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISM--KYGFAFVDFEDSRDAEDACHDLDGKTM 60
Query: 484 NGRTLRV 504
G ++R+
Sbjct: 61 EGSSMRL 67
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMR 483
RLY+G + + E +++ YG+ + + + F F+ + +AE A +LDGK
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISM--KYGFAFVDFEDSRDAEDACHDLDGKTM 60
Query: 484 NGRTLRV 504
G ++R+
Sbjct: 61 EGSSMRL 67
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMR 483
RLY+G + + E +++ YG+ + + + F F+ + +AE A +LDGK
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISM--KYGFAFVDFEDSRDAEDACHDLDGKTM 60
Query: 484 NGRTLRV 504
G ++R+
Sbjct: 61 EGSSMRL 67
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETAKREL 468
+Y+GN TED++ N FS G + + + + + F F++ A+ A +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 469 DGKMRNGRTLRV 504
+G NGR LRV
Sbjct: 66 NGVDFNGRALRV 77
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE--LFLNKE----KNFGFIKLDYRVNAETAKRE 465
RL++ NL ED++Q LF YGE +E + ++K+ K F ++ + A A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 466 LDGKMRNGRTLRV 504
LDG + GR + +
Sbjct: 340 LDGYVFKGRMMHI 352
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.013
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG--ESAELF----LNKEKNFGFIKLDYRVNAETAKRE 465
R++ G+L N+V+++ + F Y + A++ NK K +GF+ + A RE
Sbjct: 204 RVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMRE 263
Query: 466 LDGKMRNGRTLRVR 507
+DGK R +++R
Sbjct: 264 MDGKYVGNRPIKLR 277
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 35.9 bits (79), Expect = 0.017
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 307 LYIGNL----TNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAE-TAKRELD 471
LYIGNL VTE ++ + F YG+ L + EK FI+ R AE A+R +
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFN 296
Query: 472 GKMRNGRTLRVR 507
G+ L +R
Sbjct: 297 KTFIKGKRLTIR 308
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 35.5 bits (78), Expect = 0.022
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE------SAELFLNKEKNFGFIKLDYRVNAETAKR 462
S LY+ + +T E++++F P+G+ ++ K GF++ D + A+ A +
Sbjct: 128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIK 187
Query: 463 ELDGKMRNG 489
L+G + +G
Sbjct: 188 TLNGSIPSG 196
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 35.5 bits (78), Expect = 0.022
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKM 480
S +++ ++ D+ + E+ F + + + +GF+ D R NA+ E+DGK
Sbjct: 96 SNVFVRGISRDMPDTELYQAFGGITDGV-VQCHVADGYGFVLFDTRANAQKKIVEMDGKT 154
Query: 481 RNGRTLRV 504
NG+ + V
Sbjct: 155 LNGKLISV 162
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 34.7 bits (76), Expect = 0.039
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN---KEKNFGFIKLDYRVNAE 450
K+ G + LY+ NL V +D ++ F YG SA++ + + K FGF+ + A
Sbjct: 313 KYQGVN-LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 371
Query: 451 TAKRELDGKMRNGRTLRV 504
+A E++ KM + L V
Sbjct: 372 SAVTEMNSKMVCSKPLYV 389
Score = 30.3 bits (65), Expect = 0.84
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFL--NKEKNFGFIKLDYRVNAETAKREL 468
+ +Y+ N + ++ ++ +F+ +G S E+ K K FGF+ AETA + L
Sbjct: 213 TNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 469 DGKMRNGRTLRV 504
G L++
Sbjct: 273 HDSTIEGTDLKL 284
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 34.7 bits (76), Expect = 0.039
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMRN 486
LYI N+ VTE+++ LF Y + K K++ FI + R + A E +GK
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDR--VKKVKDYAFIHFNERDDCLKAMEEWNGKELE 436
Query: 487 G 489
G
Sbjct: 437 G 437
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 34.7 bits (76), Expect = 0.039
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN---KEKNFGFIKLDYRVNAE 450
K+ G + LY+ NL V +D ++ F YG SA++ + + K FGF+ + A
Sbjct: 253 KYQGVN-LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 311
Query: 451 TAKRELDGKMRNGRTLRV 504
+A E++ KM + L V
Sbjct: 312 SAVTEMNSKMVCSKPLYV 329
Score = 31.5 bits (68), Expect = 0.36
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFL--NKEKNFGFIKLDYRVNAETAKREL 468
+ +Y+ N + ++ ++ LF+ +G S E+ K K FGF+ AETA + L
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 212
Query: 469 DGKMRNGRTLRV 504
G L++
Sbjct: 213 HDSTIEGTDLKL 224
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 34.7 bits (76), Expect = 0.039
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN---KEKNFGFIKLDYRVNAE 450
K+ G + LY+ NL V +D ++ F YG SA++ + + K FGF+ + A
Sbjct: 250 KYQGVN-LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 308
Query: 451 TAKRELDGKMRNGRTLRV 504
+A E++ KM + L V
Sbjct: 309 SAVTEMNSKMVCSKPLYV 326
Score = 31.5 bits (68), Expect = 0.36
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFL--NKEKNFGFIKLDYRVNAETAKREL 468
+ +Y+ N + ++ ++ LF+ +G S E+ K K FGF+ AETA + L
Sbjct: 150 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 209
Query: 469 DGKMRNGRTLRV 504
G L++
Sbjct: 210 HDSTIEGTDLKL 221
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 34.7 bits (76), Expect = 0.039
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN---KEKNFGFIKLDYRVNAE 450
K+ G + LY+ NL V +D ++ F YG SA++ + + K FGF+ + A
Sbjct: 313 KYQGVN-LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 371
Query: 451 TAKRELDGKMRNGRTLRV 504
+A E++ KM + L V
Sbjct: 372 SAVTEMNSKMVCSKPLYV 389
Score = 31.5 bits (68), Expect = 0.36
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFL--NKEKNFGFIKLDYRVNAETAKREL 468
+ +Y+ N + ++ ++ LF+ +G S E+ K K FGF+ AETA + L
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 469 DGKMRNGRTLRV 504
G L++
Sbjct: 273 HDSTIEGTDLKL 284
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETAKRE 465
++++G LT++ T+D ++ +S +GE ++ + + + FGF+ + + A ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 466 ----LDGK 477
+DGK
Sbjct: 84 RPHIIDGK 91
Score = 33.5 bits (73), Expect = 0.090
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 405
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 154
Query: 406 KNFGFIKLD 432
+ FGF+ D
Sbjct: 155 RGFGFVTFD 163
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETAKRE 465
++++G LT++ T+D ++ +S +GE ++ + + + FGF+ + + A ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 466 ----LDGK 477
+DGK
Sbjct: 84 RPHIIDGK 91
Score = 33.5 bits (73), Expect = 0.090
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 405
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 154
Query: 406 KNFGFIKLD 432
+ FGF+ D
Sbjct: 155 RGFGFVTFD 163
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAETAKRE 465
++++G LT++ T+D ++ +S +GE ++ + + + FGF+ + + A ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 466 ----LDGK 477
+DGK
Sbjct: 84 RPHIIDGK 91
Score = 33.5 bits (73), Expect = 0.090
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 405
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 154
Query: 406 KNFGFIKLD 432
+ FGF+ D
Sbjct: 155 RGFGFVTFD 163
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.090
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 405
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 57 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 116
Query: 406 KNFGFIKLD 432
+ FGF+ D
Sbjct: 117 RGFGFVTFD 125
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.5 bits (73), Expect = 0.090
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 405
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 57 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 116
Query: 406 KNFGFIKLD 432
+ FGF+ D
Sbjct: 117 RGFGFVTFD 125
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL-----NKEKNFGFIKLDYRVNAETAKREL 468
+L+IG L+ +EDE++ LF+ +GE E+ + K F+K + ++A A L
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISAL 184
Query: 469 DG 474
G
Sbjct: 185 HG 186
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 426
+L++G + ++ E ++++LF +G+ E + K+K G K
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHK 70
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL-----NKEKNFGFIKLDYRVNAETAKREL 468
+L+IG L+ +EDE++ LF+ +GE E+ + K F+K + ++A A L
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISAL 184
Query: 469 DG 474
G
Sbjct: 185 HG 186
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 426
+L++G + ++ E ++++LF +G+ E + K+K G K
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHK 70
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFL-----NKEKNFGFIKLDYRVNAETAKRELD 471
L++G + + +E +++ F YG+ +L + K + + FI+ + TA ++ D
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 472 GKMRNGRTLRV 504
G +G+ L V
Sbjct: 166 GIKVDGKRLVV 176
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLN----KEKNFGFIKLDY--RVNAETAKREL 468
LY+GNL+ ED++ LF G+ + + K+ GF ++Y R +AE A + +
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNI 98
Query: 469 DGKMRNGRTLR 501
+ R +R
Sbjct: 99 SNTRMDDRVIR 109
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.27
Identities = 15/69 (21%), Positives = 39/69 (56%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKM 480
S+L++GNL ++V ++++ +F P+ + E + KN+ F+ ++ + + L G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDI--VKNYAFVHIE-EDDVDPIITRLTGYT 59
Query: 481 RNGRTLRVR 507
+G+ + ++
Sbjct: 60 IDGKVVNIK 68
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.27
Identities = 15/69 (21%), Positives = 39/69 (56%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKM 480
S+L++GNL ++V ++++ +F P+ + E + KN+ F+ ++ + + L G
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDI--VKNYAFVHIE-EDDVDPIITRLTGYT 59
Query: 481 RNGRTLRVR 507
+G+ + ++
Sbjct: 60 IDGKVVNIK 68
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG--ESAEL----FLNK-EKNFGFIKLDYRVNAETAKR 462
R+ I NL+ +V + ++ +FS YG ++ +L F N + +G+++ D +AE + +
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIK 193
Query: 463 ELDGKMRNGRTLRV 504
+DG +G + V
Sbjct: 194 HMDGGQIDGMAVHV 207
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 30.7 bits (66), Expect = 0.63
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKE---KNFGFIKLDYRVNAETAKR 462
+S++++ N+ T+DE++ LFS +G S +K+ K F+ D +A+
Sbjct: 682 KSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVA 741
Query: 463 ELDGKMRNGRTLRV 504
D M R L V
Sbjct: 742 SGDKLMLRERELEV 755
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 30.7 bits (66), Expect = 0.63
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQN----LFSPYGESAELF-LNKEKNFGFIKLDYR--VNAE 450
N +Y+ NL V +DE++ +F+ +GE +L KEK G + ++ +A
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSAS 64
Query: 451 TAKRELDGKMRNGRTLRVR 507
A R L G G+ +R++
Sbjct: 65 NALRALQGFPFYGKPMRIQ 83
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 30.7 bits (66), Expect = 0.63
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE------SAELFLNKEKNFGF 420
+P ++ + + +S ++IGN+ + T +EI+ F G+ + F K+KNF +
Sbjct: 42 VPPTEEEQKAIDAKS-VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAY 100
Query: 421 IKLDYRVNAETA 456
I+ D + E A
Sbjct: 101 IEFDDSSSIENA 112
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 30.3 bits (65), Expect = 0.84
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 417
+YIG L+ ++E ++ +FS YGE + L ++K+ G
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTG 76
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN 399
S + + ++++IG L N +TED+++ L +G LN
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 323
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 361 FSPYGESAELFLNKEKNFGFIKLDYRVNA 447
F+ G+SA+ NK NFGF+K+D A
Sbjct: 6 FADLGKSAKDLFNKGYNFGFLKIDSTTRA 34
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
LY+GNL + VTED I LF+ G
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIG 70
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN 399
S + + ++++IG L N +TED+++ L +G LN
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 323
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN 399
S + + ++++IG L N +TED+++ L +G LN
Sbjct: 258 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 298
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN 399
S + + ++++IG L N +TED+++ L +G LN
Sbjct: 261 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 301
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESA------ELFLNKEKNFGF 420
+P ++ + + +S ++IGN+ + T +E++ F G + F K+KNF +
Sbjct: 48 VPPTEEEQKAIDAKS-VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAY 106
Query: 421 IKLDYRVNAETA 456
I+ D + E A
Sbjct: 107 IEFDDSSSIENA 118
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAE 450
+++G L VT +EI +FS +G + ++ ++++G+ K RV E
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFE 368
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAE 450
+++G L VT +EI +FS +G + ++ ++++G+ K RV E
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFE 368
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +1
Query: 196 IQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
+ EEM L + + + P ++ E K + RS +Y+GN+ T EI+ F+ G
Sbjct: 14 VTAEEMELLKQALSASKKYM-APTAEEQE-KTDARS-VYVGNVDWKSTVSEIEEHFAVCG 70
Query: 376 ESAELFLNKEKNFGFIK 426
+ A + + K+K G+ K
Sbjct: 71 KVARVTIPKDKFTGYQK 87
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAE 450
+++G L VT +EI +FS +G + ++ ++++G+ K RV E
Sbjct: 107 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFE 154
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAE 450
+++G L VT +EI +FS +G + ++ ++++G+ K RV E
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFE 368
>U88177-7|AAB42288.1| 339|Caenorhabditis elegans Hypothetical
protein F53E10.1 protein.
Length = 339
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -2
Query: 465 FPFRCFSIHPIVQFYKTKVFLLVQKQFSRFAVRRE 361
F F+C + P+++ + +VF+LV++ +F R+
Sbjct: 62 FAFKCTKLGPMMEELEDRVFVLVEESTGKFITARQ 96
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 417
K N ++++G ++ +V +++ + F+ YGE A+ + ++ G
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNG 67
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 417
K N ++++G ++ +V +++ + F+ YGE A+ + ++ G
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNG 67
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Frame = +1
Query: 208 EMMLANKLKDLTGPLLDLPAI---DQSEVKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYG 375
+ +L N+ +L G +D P + +++ K +++ ++IG L+ T ++++ F YG
Sbjct: 100 DKVLNNREHELDGKKID-PKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYG 158
Query: 376 --ESAELFLNK----EKNFGFIKLDYRVNA----ETAKRELDGKM 480
E A L +K + FGF+ D A E E++GKM
Sbjct: 159 KVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKM 203
>AL110501-3|CAB54506.1| 199|Caenorhabditis elegans Hypothetical
protein Y79H2A.4 protein.
Length = 199
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPY-GESAELFLNKEKNFGF---IKLDYRVNAET 453
K + + + +GN+ + +T E+ F G + LF ++ + I D +AE
Sbjct: 117 KLDEKPCILVGNIPSALTSSEMMGHFGGLKGFTGILFKGEDTSLSKTVRILFDESSSAEA 176
Query: 454 AKRELDGKMRNGRTL 498
A +++DG NG+ L
Sbjct: 177 AAKDIDGSNWNGKEL 191
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Frame = +1
Query: 208 EMMLANKLKDLTGPLLDLPAI---DQSEVKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYG 375
+ +L N+ +L G +D P + +++ K +++ ++IG L+ T ++++ F YG
Sbjct: 100 DKVLNNREHELDGKKID-PKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYG 158
Query: 376 --ESAELFLNK----EKNFGFIKLDYRVNA----ETAKRELDGKM 480
E A L +K + FGF+ D A E E++GKM
Sbjct: 159 KVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKM 203
>Z83106-6|CAB05497.2| 339|Caenorhabditis elegans Hypothetical
protein F22B8.7 protein.
Length = 339
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -2
Query: 465 FPFRCFSIHPIVQFYKTKVFLLVQKQFSRFAVRRE 361
F F+C + P++ + + F+LV++ +F R+
Sbjct: 62 FAFKCTKLGPVMGDLEDRAFMLVEESTGKFITARQ 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.136 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,687,116
Number of Sequences: 27780
Number of extensions: 174939
Number of successful extensions: 644
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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