Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_C01
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +1

Query: 367 PYGESAELFLNKEKNFGFIKLDYRVNAETAKRELDGKMR 483
           PY    ++++   K+F ++K+ +  +++T  R L G+ +
Sbjct: 150 PYSHQTDVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQ 188


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 62  KVGQVRNKETNNLVQN*AEEMDHHVINS 145
           K+   + +E   L+QN  +EM + V+ S
Sbjct: 346 KIVHEKQQEITGLIQNIIQEMKNDVLLS 373


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 62  KVGQVRNKETNNLVQN*AEEMDHHVINS 145
           K+   + +E   L+QN  +EM + V+ S
Sbjct: 384 KIVHEKQQEITGLIQNIIQEMKNDVLLS 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.136    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,273
Number of Sequences: 438
Number of extensions: 2174
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)