Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B24
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.64 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.64 

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
 Frame = +3

Query: 105 KSEQLVVTFAAGYIAGVFCAIVSHPADTVVSKLNQDKTATVGSIIGKLG---WAGVWKGL 275
           K    ++++    +      IVS+P DTV  ++          I+ K     WA ++K  
Sbjct: 208 KKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTE 267

Query: 276 GPRI--------VMIGTLTALQWFIYDAVK 341
           G           ++ GT  AL   +YD +K
Sbjct: 268 GGNAFFKGAFSNILRGTGGALVLVLYDEIK 297


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
 Frame = +3

Query: 105 KSEQLVVTFAAGYIAGVFCAIVSHPADTVVSKLNQDKTATVGSIIGKLG---WAGVWKGL 275
           K    ++++    +      IVS+P DTV  ++          I+ K     WA ++K  
Sbjct: 208 KKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTE 267

Query: 276 GPRI--------VMIGTLTALQWFIYDAVK 341
           G           ++ GT  AL   +YD +K
Sbjct: 268 GGNAFFKGAFSNILRGTGGALVLVLYDEIK 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,420
Number of Sequences: 438
Number of extensions: 2437
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)