Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B23
         (141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    24   2.4  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    24   2.4  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    23   4.2  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    23   5.5  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    23   7.3  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 8    ASNYLFIYNHLLILEFFLP 64
            ++ Y+ IYN ++ILE  LP
Sbjct: 1222 STEYMHIYNSVIILEKILP 1240


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 8   ASNYLFIYNHLLILEFFLP--IHL 73
           A N+LFI +HL I+ +  P  +HL
Sbjct: 556 AQNWLFIMHHLEIVGYLFPHLVHL 579


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 89  ISFLSIDE*VRKILKLVNDYK*ISNYL 9
           +   S+DE  +KIL L ND+  I   L
Sbjct: 651 VQITSVDEGCKKILSLQNDFNYIVRML 677


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 26  IYNHLLILEFFLPIHLY*EMKLKCLFCNIKI 118
           IY H   L F L  + Y E+   C+F   K+
Sbjct: 70  IYFHRFYLRFSLKNYHYYEVAATCIFLATKV 100


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 107 YKTDTSISFLSIDE*VRKILKLVNDYK*ISNYLP 6
           Y+ +  I  LS    +RKI   VN Y    +++P
Sbjct: 163 YRQENKIKHLSFHAYLRKINSNVNKYASSQSFIP 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,903
Number of Sequences: 5004
Number of extensions: 5179
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)