Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B20
         (237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   1.3  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    24   2.3  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    24   3.1  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    24   3.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      23   4.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    23   5.4  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    23   5.4  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    23   5.4  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    23   7.1  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    22   9.4  

>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 82  GDDDIGEASDIFTGVLYNTYSPP 150
           G  D+ ++S +FTGVL ++ S P
Sbjct: 434 GSSDLDQSSPLFTGVLSSSDSVP 456


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 109 DIFTGVLYNTYSPPP 153
           D FT +LYN  SP P
Sbjct: 368 DTFTAILYNDNSPQP 382


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 235 SFRRH*REASPDRPLSDRRRTVYRNRIQAAASM 137
           SF R  R  SP RPL   R    R+    +ASM
Sbjct: 207 SFNRLSRNHSPTRPLLGNRDLFRRSSNHVSASM 239


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 142 SPPPGFCF 165
           SPPPGFC+
Sbjct: 130 SPPPGFCY 137


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 208 SPDRPLSDRRRTVYRNRIQ 152
           +P+ PLS R  T+ +NR++
Sbjct: 64  TPESPLSKRNPTIKQNRVR 82


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 159 ESRRRRVCVIQNSSEYIGCFSDIIISTPQHLHSLVM 52
           ES + R  + Q + + I  FS+I++ TP+  + + M
Sbjct: 198 ESLKERADIGQAAGDAIVSFSEILLLTPRGRYDIDM 233


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 82   GDDDIGEASDIFTGVLYNTYSPP 150
            G   + ++S +FTGVL +T + P
Sbjct: 1046 GSSSLDQSSPLFTGVLSSTAALP 1068


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 1   ARGFLGRIDYQDKSARL 51
           A GF+   D+QDK + L
Sbjct: 253 ANGFISNADFQDKKSNL 269


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 49  LHNKTMEMLWRGDDDIGEASD 111
           LH  T ++L RG+++ G  SD
Sbjct: 421 LHGHTFQVLERGEENAGLYSD 441


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 26  ITRTSLRVYITRLWRC 73
           + R   +VY TR+W C
Sbjct: 712 LVRDLFKVYKTRIWMC 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,146
Number of Sequences: 5004
Number of extensions: 13357
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)