Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B20
(237 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 58 1e-09
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 55 9e-09
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 33 0.024
05_01_0335 + 2652334-2652340,2652459-2652550,2652642-2653362,265... 27 2.8
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 27 2.8
12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545... 25 6.5
11_03_0089 + 9794673-9794747,9795216-9795308,9795611-9795772 25 6.5
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301... 25 6.5
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 25 8.6
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 25 8.6
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 57.6 bits (133), Expect = 1e-09
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +1
Query: 19 RIDYQDKSARLHNKTMEMLWRGDDDIGEASDIFTGVLYNTYSPPPG 156
RIDYQD+ R K +E++WRG G ++DIF G+ Y PPPG
Sbjct: 197 RIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPG 242
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 54.8 bits (126), Expect = 9e-09
Identities = 24/49 (48%), Positives = 31/49 (63%)
Frame = +1
Query: 19 RIDYQDKSARLHNKTMEMLWRGDDDIGEASDIFTGVLYNTYSPPPGFCF 165
RIDYQD++ R +K +E++WRG G +S IFT YSPP GF F
Sbjct: 205 RIDYQDRAKRKGDKGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGF 253
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 33.5 bits (73), Expect = 0.024
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 19 RIDYQDKSARLHNKTMEMLWRGDDDIGEASDIFTGVL-YNTYSPP 150
R Y+ K NK +E LWR + DI E +DIF ++ + +Y P
Sbjct: 302 RTHYELKKELAMNKNLEYLWRQNWDIDETTDIFVHMMPFYSYDIP 346
>05_01_0335 +
2652334-2652340,2652459-2652550,2652642-2653362,
2653456-2653533,2653658-2653684,2653871-2653938,
2654089-2654174,2654251-2654333,2654478-2654620,
2654709-2654810,2654906-2655199,2655282-2655404,
2655733-2656119
Length = 736
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 177 AQYIETESRRRRVCVIQNSSEYIGCFSDII 88
AQ + T+ RR C+I ++ +Y+ F ++
Sbjct: 530 AQRMNTDIRRAIFCIIMSAEDYVDAFEKLL 559
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 193 LSDRRRTVYRNRIQAAASMC-YTELQ*IYR 107
+SDRRR+++R I + +C T LQ YR
Sbjct: 1976 ISDRRRSLFRENIPIDSKLCVMTVLQFCYR 2005
>12_02_0715 - 22453747-22453935,22454347-22454457,22454514-22454572,
22454893-22455067,22455255-22455307,22455670-22455739,
22457044-22457218,22457639-22457703,22458196-22460826
Length = 1175
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 168 IETESRRRRVCVIQNSSEYIGC 103
+E E+ VC +NS EY+GC
Sbjct: 963 LEREAGAYFVCFQRNSREYVGC 984
>11_03_0089 + 9794673-9794747,9795216-9795308,9795611-9795772
Length = 109
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 34 DKSARLHNKTMEMLWRGDDDIGEASDIFTGVLYNTYSPP 150
DK+ ++H++T ++ R + +G + +F L PP
Sbjct: 52 DKTYQVHDRTQNLVARTESLMGRLNQVFASSLPGPALPP 90
>08_01_0341 +
3011238-3011246,3011824-3012192,3012412-3012505,
3012594-3012631,3012862-3013008,3013912-3014011,
3014615-3015042,3015234-3015389
Length = 446
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 88 HLHATASP*SCYVDAQTCPGNLSCLG 11
H HA AS VD TCP + C+G
Sbjct: 142 HAHALAST----VDLSTCPDGIICVG 163
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 232 FRRH*REASPDRPLSDRRRTVYRNRIQ 152
F R R +P P+SD RRT + R++
Sbjct: 191 FNRMARPLAPKPPISDFRRTTRKKRLK 217
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 156 ILFRYTVRRRSDSGRSGLASLQCRR 230
++F + RRR S R L L+CRR
Sbjct: 121 LVFPWPARRRCPSRRRSLFRLRCRR 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,282,399
Number of Sequences: 37544
Number of extensions: 102853
Number of successful extensions: 277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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