Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B20
         (237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    57   2e-09
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    26   4.1  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    26   4.1  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    25   5.4  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    25   7.2  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    25   7.2  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    25   7.2  
AC084154-6|AAO91684.1|  319|Caenorhabditis elegans Serpentine re...    25   7.2  

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 10  FLGRIDYQDKSARLHNKTMEMLWRGDDDIGEASDIFTGVLYN-TYSPPPGFCFXXXXXXX 186
           +  RI Y +K  RL NKT+E +W   DDI + + +FTG  +N  Y PP GFC+       
Sbjct: 190 YFARIHYLEKQIRLKNKTLEFMWNTSDDITD-NKLFTGAFFNDNYGPPEGFCWDSLCGDD 248

Query: 187 XXXXXXXSPLFNVDEKI 237
                     +NV EK+
Sbjct: 249 PIMDNLNIEGYNVKEKV 265


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +2

Query: 62  LWRCCGVEMMISEKHPIYSL---EFCITHTR 145
           LWR  G ++ I E+  +YS+     CI  TR
Sbjct: 99  LWRAIGQKLFIEERSLLYSITDGSLCIDFTR 129


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +2

Query: 62  LWRCCGVEMMISEKHPIYSL---EFCITHTR 145
           LWR  G ++ I E+  +YS+     CI  TR
Sbjct: 99  LWRAIGQKLFIEERSLLYSITDGSLCIDFTR 129


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 76   TASP*SCYVDAQTCPGNLSC 17
            T  P SC +   TCP   SC
Sbjct: 1166 TGEPQSCAIGQSTCPSGYSC 1185


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 58  KTMEMLWRGDDDIGEASDIFTGVL 129
           K   +LWR  ++IGE  +I   V+
Sbjct: 434 KNTNLLWRNSEEIGENGEILYNVV 457


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 31  QDKSARLHNKTMEMLWRGDDDIGEASDIFTGVLYNTYSPPP 153
           QD++   H  T+++L    D IGE   +    + + YS PP
Sbjct: 298 QDQAPPPHPTTVDLLMM--DPIGEGIPVVDSSINSNYSTPP 336


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 31  QDKSARLHNKTMEMLWRGDDDIGEASDIFTGVLYNTYSPPP 153
           QD++   H  T+++L    D IGE   +    + + YS PP
Sbjct: 315 QDQAPPPHPTTVDLLMM--DPIGEGIPVVDSSINSNYSTPP 353


>AC084154-6|AAO91684.1|  319|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 64 protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 62  LWRCCGVEMMISEKHPIYSLEFCI 133
           LW  CG+ M +   H +Y    C+
Sbjct: 95  LWSTCGITMGLINLHTLYYRTICL 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,972,110
Number of Sequences: 27780
Number of extensions: 75670
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)