Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B20
         (237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.38 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.38 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   0.51 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   3.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   4.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   4.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   4.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 0.38
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 120 WSSV*HILAAAWILFRYTVRRRSD 191
           W+++ +I+  AW LF   V  R D
Sbjct: 110 WTNIYYIIILAWALFYLLVSLRID 133


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 0.38
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 120 WSSV*HILAAAWILFRYTVRRRSD 191
           W+++ +I+  AW LF   V  R D
Sbjct: 163 WTNIYYIIILAWALFYLLVSLRID 186


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 0.51
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 129 QNSSEYIGCFSDIIISTPQHLH 64
           +N S+Y   F +I+  +PQ +H
Sbjct: 349 ENESDYQDAFCNIVSCSPQTVH 370


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 102 FSDIIISTPQHLHSLVM 52
           FS++I S PQH    V+
Sbjct: 263 FSELIQSKPQHARRKVL 279


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 13  LGRIDYQDKSARLHNKTMEMLWRGDDDIG 99
           LGR  + D   R H+   +++  G+   G
Sbjct: 49  LGRFKHTDACCRTHDMCPDVMSAGESKHG 77


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 13  LGRIDYQDKSARLHNKTMEMLWRGDDDIG 99
           LGR  + D   R H+   +++  G+   G
Sbjct: 54  LGRFKHTDACCRTHDMCPDVMSAGESKHG 82


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 94  IGEASDIFTGVL 129
           +G+ SD+ TG+L
Sbjct: 40  LGDLSDVHTGIL 51


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 13  LGRIDYQDKSARLHNKTMEMLWRGDDDIG 99
           LGR  + D   R H+   +++  G+   G
Sbjct: 54  LGRFKHTDACCRTHDMCPDVMSAGESKHG 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,067
Number of Sequences: 438
Number of extensions: 972
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)