Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B19
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   237   1e-63
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   236   1e-63
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    41   1e-04
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    29   0.58 
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    26   3.1  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   4.1  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   4.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.4  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  237 bits (579), Expect = 1e-63
 Identities = 113/156 (72%), Positives = 127/156 (81%)
 Frame = +3

Query: 66  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 245
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 246 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHH 425
           KDPKRLFEGNA           DE +MKLDYVL L+IEDFLERRLQTQVF  GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 426 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 533
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFAL 160


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  236 bits (578), Expect = 1e-63
 Identities = 113/156 (72%), Positives = 127/156 (81%)
 Frame = +3

Query: 66  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 245
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 246 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHH 425
           KDPKRLFEGNA           DE +MKLDYVL L+IEDFLERRLQTQVF  GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 426 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 533
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFAL 160


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 26/123 (21%), Positives = 48/123 (39%)
 Frame = +3

Query: 129 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 308
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N           
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 309 XDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPS 488
              K    D      +     RRL   +    +++ +  A  LI Q H+RV   V+  P+
Sbjct: 88  LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147

Query: 489 FIV 497
           ++V
Sbjct: 148 YLV 150


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 278 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 150
           SI F+ S RIL     Q T  LT  S     + HF ++  TIL
Sbjct: 18  SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -3

Query: 380 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDA 204
           KT++ E+ N    H+  +F   ++K  +  Q         QSL     E   FT SL   
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246

Query: 203 SERVLDAPHFTLVAETILSDDLQLL 129
           +E V+D    T +++ +L  D + L
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYL 271


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 324 MKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHI 455
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 369 ERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 506
           +  L+  V N       H +R + ++R  +VRK++ ++   I RLD
Sbjct: 17  QENLERDVTNTASEYIAHESREIEKKRLQKVRKEISSVKEKIRRLD 62


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 378 DGAPRSPQSSNRAHNPVSSVSHQALRP 298
           DGA  S Q+   AHNP +SVS + +RP
Sbjct: 90  DGA--SSQNDAFAHNPSTSVSVELVRP 114


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 39  LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 197
           ++K VN      FS +    +R  + A +D   + + E   RN++   +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 413 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLS 532
           V+ + P +++  +   P  GG HS + RP   R +  LLS
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLS 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,839
Number of Sequences: 5004
Number of extensions: 41387
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)