Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B19
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 210 4e-55
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 210 4e-55
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 209 9e-55
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 128 3e-30
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
07_03_1357 - 25982861-25983068,25983354-25983361 43 2e-04
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 30 1.0
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 29 3.1
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 28 4.1
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 4.1
11_06_0513 + 24466131-24469487 27 7.2
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 7.2
10_01_0251 + 2641320-2643272 27 9.5
02_05_1008 - 33461225-33462334 27 9.5
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 27 9.5
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 210 bits (514), Expect = 4e-55
Identities = 99/153 (64%), Positives = 121/153 (79%)
Frame = +3
Query: 75 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 254
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 255 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARI 434
+R+FEG A + Q KLDYVL L +E+FL RRLQT VF AG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
Query: 435 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 533
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL
Sbjct: 130 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSL 162
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 210 bits (514), Expect = 4e-55
Identities = 99/153 (64%), Positives = 121/153 (79%)
Frame = +3
Query: 75 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 254
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 255 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARI 434
+R+FEG A + Q KLDYVL L +E+FL RRLQT VF AG+AKSIHHAR+
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 345
Query: 435 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 533
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL
Sbjct: 346 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSL 378
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 209 bits (511), Expect = 9e-55
Identities = 99/151 (65%), Positives = 120/151 (79%)
Frame = +3
Query: 81 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 260
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 261 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILI 440
+FEG A + Q KLDYVL L +E+FL RRLQT VF AG+AKSIHHAR+LI
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 154
Query: 441 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 533
RQRHIRV +Q+VNIPSF+VR++S KHIDFSL
Sbjct: 155 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSL 185
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 128 bits (309), Expect = 3e-30
Identities = 67/127 (52%), Positives = 82/127 (64%)
Frame = +3
Query: 75 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 254
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 255 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARI 434
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VF G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 435 LIRQRHI 455
LIRQ HI
Sbjct: 119 LIRQHHI 125
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 75 FSKTYVTPRRPFEKARLDQELKIIGEYG 158
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3
Query: 456 RVRKQVVNIPSFIVRLDSGKHIDFSL 533
RV +Q+VNIPSFIVRL+S KHI FSL
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSL 28
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 372 RRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 497
RRL T + A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 386 SGVQCWSCEVNPSCPHLDQTEAY 454
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 354 IEDFLERRLQTQVFNAGLAKSIHHAR 431
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 129 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 251
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2
Query: 392 VQCWSCEVNPSCPHLDQTEAYSCPQ 466
+QCW E C HL + CP+
Sbjct: 961 LQCWPVENGAICEHLKELSIIQCPK 985
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 108 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 242
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>10_01_0251 + 2641320-2643272
Length = 650
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -3
Query: 242 LECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIKT-RLLERTSRSYVCFGKYRW 66
LE ++ TG+ + R++ FT+V IL D+ Q+ +KT + ER GK+R
Sbjct: 365 LEIKKITGNYS----RIIGKDMFTVVYSGILEDNTQVAVKTHNMFER--------GKWRC 412
Query: 65 YPVVHHLGELV 33
++ L EL+
Sbjct: 413 ANELNSLSELI 423
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +3
Query: 315 EKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 494
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 495 VRLDSGKHI 521
+ +DSG+ +
Sbjct: 217 L-IDSGRRV 224
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -2
Query: 531 ERSQCACRSPGGR*TKECSPPA-CGHEYASV*SRCGHDGLTSQDQH*TPESEDGAPRSPQ 355
+RS A + S A CG++Y R G DGL QH P+ P
Sbjct: 164 DRSAAAAAAAAALSVNSSSQEAVCGNKYLF---RDGEDGLDELQQHVPPQDSRNVCGIPW 220
Query: 354 SSNRAHNPVSSVSHQALR 301
+ +R H+ S+ A R
Sbjct: 221 NWSRLHHRGKSILDMAGR 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,761,964
Number of Sequences: 37544
Number of extensions: 305180
Number of successful extensions: 837
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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