Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B19
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   249   8e-67
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    40   8e-04
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    30   0.91 
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    30   1.2  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   4.8  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   4.8  
Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    27   6.4  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  249 bits (610), Expect = 8e-67
 Identities = 120/158 (75%), Positives = 135/158 (85%)
 Frame = +3

Query: 60  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 239
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 240 EEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSI 419
           E+KDPKRLFEGNA           DE +MKLDYVLGLK+EDFLERRLQTQVF  GLAKSI
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122

Query: 420 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSL 533
           HHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSL 160


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
 Frame = +3

Query: 168 KREVWRVKYTLA-RIRKAARELLTLEEKDPKR--LFEGNAXXXXXXXXXXXDEKQMKLDY 338
           KRE + +  TLA + R+ A  +  L E DP R    E               +   ++  
Sbjct: 40  KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99

Query: 339 VLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 509
           V G     F  RRL   + N G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSS 153


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -2

Query: 507 SPGGR*TKECSPPACGHEYASV*SRCGHDGLTSQDQH*TPESEDGAPRSPQSSNRAHN 334
           SPGG   ++ +P   G +  S   R G DG   Q Q+ +  + D +     SS R H+
Sbjct: 434 SPGGSAGRQAAP---GDDVGSSEDRSGQDGRRVQQQNASTPASDNSSSHDDSSERRHS 488


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 404 SCEVNPSCPHLDQTEAYSCPQAGGEHS 484
           +CE+N  CP  D    ++CP  GG H+
Sbjct: 363 ACELN--CPKCDPKHTFTCPAVGGIHN 387


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -2

Query: 249 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 157
           P P +   H  P GC R C     L  C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -2

Query: 249 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 157
           P P +   H  P GC R C     L  C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571


>Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical
           protein Y69H2.3d protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +2

Query: 317 ETDETGLCARFED*GLLGAPSSDSGVQCWSCEVNPSCPHLDQTEAYSCP 463
           ET  TG+       G  G       V C  C+  P C   D   A +CP
Sbjct: 194 ETPPTGITCANVRCGFKGGCGMVEPVGCVGCKRQPQCLEEDYCRAQNCP 242


>Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical
           protein Y69H2.3a protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +2

Query: 317 ETDETGLCARFED*GLLGAPSSDSGVQCWSCEVNPSCPHLDQTEAYSCP 463
           ET  TG+       G  G       V C  C+  P C   D   A +CP
Sbjct: 299 ETPPTGITCANVRCGFKGGCGMVEPVGCVGCKRQPQCLEEDYCRAQNCP 347


>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -2

Query: 393 TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVE-HCLQTIS*DPSPRVSTVHGQ 217
           T  +  GAP +    N    P ++ +  A  P    V   + L  +S + +  +  ++  
Sbjct: 749 TTAASSGAPVNSNIQNHRATPSTAGAPMAATPIMTAVTSANELAALSPERAQALLNMYRM 808

Query: 216 PYGCERACT 190
           P GC+R CT
Sbjct: 809 PLGCQRCCT 817


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/42 (23%), Positives = 27/42 (64%)
 Frame = +3

Query: 351 KIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVV 476
           ++EDFLE+ ++ ++  +   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/42 (23%), Positives = 27/42 (64%)
 Frame = +3

Query: 351 KIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVV 476
           ++EDFLE+ ++ ++  +   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,173,811
Number of Sequences: 27780
Number of extensions: 250387
Number of successful extensions: 797
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)