Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B18
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   2.2  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   2.2  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   5.0  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   5.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   5.0  
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo...    25   6.7  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   6.7  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.8  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    24   8.8  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 410 LAAPPVPTPPYCRGVPRQNPTWTHQ--NRLCIS 318
           L A P+PTP +C+   R+  +W  +  ++ C+S
Sbjct: 203 LDALPLPTPEFCQICEREIQSWFFELHSKFCLS 235


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 87  FFSPLDGLTPVGSSGSYSFLISFLLLAS 4
           F +P D +   GSS SY+ L+ +  L S
Sbjct: 150 FLAPQDAILSSGSSSSYTALLDYTFLPS 177


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 368 LLDNKVESEPEAPRALSL 421
           LL+ ++ESE +AP ALSL
Sbjct: 620 LLEKRMESEGKAPTALSL 637


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 350 SDSDVELLDNKVESEPEAPRALSLSDDD 433
           S  D   LD+  ++EP A + +S  +DD
Sbjct: 892 SGGDTSALDSNAKNEPTAAKPISKLEDD 919


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 388 LHLIVEEFHVRIRRGLIRTVFV 323
           LHL V+E    IR GL   +FV
Sbjct: 454 LHLTVQEISATIRNGLTPIIFV 475


>SPCC24B10.13 |skb5||Shk1 kinase binding protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 329 DGSDESTSDSDVELLDNKVESEPEAPRA 412
           +GSD+S S  D E+  +  ESE   P A
Sbjct: 50  EGSDDSESIDDTEVFYDAEESESTHPSA 77


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 329 DGSDESTSDSDV---ELLDNKVESEPEAPRALSLSDDD 433
           D SDE  S  D+   E  D+KVE    AP + + SD++
Sbjct: 243 DESDEVASIIDIKEDETFDSKVEIPEAAPSSSTESDEE 280


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/36 (27%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 305 VANVQKYKDGS--DESTSDSDVELLDNKVESEPEAP 406
           +++ ++ ++GS  +E   DSDVEL ++ +  + ++P
Sbjct: 230 ISDDEEDEEGSADEEDEEDSDVELSESSLSDDEDSP 265


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 278 REKPGARRAVANVQKYKDGSDESTSDSDVELLDNKVESE-PEAP 406
           R+ P      ++ Q + + SDE   D+D  +  N V S   EAP
Sbjct: 349 RDHPSTNNNASSYQNFNETSDEG-EDNDATIRANNVRSSFLEAP 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,113,264
Number of Sequences: 5004
Number of extensions: 14902
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)