Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B18
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 36 0.011
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 30 0.94
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 27 1.2
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 1.2
08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216... 29 1.6
09_04_0255 - 16146465-16147145 29 2.2
01_01_0694 + 5372779-5373429 29 2.2
04_04_1517 + 34125549-34125634,34125725-34125789,34125878-341260... 28 2.9
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20... 27 6.6
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 27 6.6
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 27 6.6
03_06_0711 - 35682293-35682952 27 6.6
03_03_0014 + 13749178-13750695 27 6.6
01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401 27 6.6
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 27 8.7
09_04_0377 + 17086775-17088310 27 8.7
07_03_0148 - 14448475-14449053 27 8.7
02_05_1321 - 35695474-35696161,35696315-35696547 27 8.7
02_05_0925 - 32768815-32769654 27 8.7
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 36.3 bits (80), Expect = 0.011
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 281 EKPGA--RRAVANVQKYKDGSDESTSDSDVELLDNKVESEPEAPRALSLSDD 430
EKP A ++ QK KD SD S S+SD D V ++ +AP + +DD
Sbjct: 156 EKPAAPVKKTSVTAQKKKDDSDSSESESDESDSDEDVPTKSKAPAVAAKNDD 207
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 29.9 bits (64), Expect = 0.94
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 281 EKPGARRAVANVQKYKDGSDESTSDSDVELLDNKVESEPEAPRALSLSDDDD 436
EK R +A VQK K S +S+S E + EP+ + +++D+D
Sbjct: 558 EKRRVRAELAAVQKAKKASGSRSSNSHAESEEEDATEEPKDNQTEKVNEDED 609
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 27.1 bits (57), Expect(2) = 1.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 434 HHHR*GRELAAPPVPTPP 381
HHHR G PP P PP
Sbjct: 90 HHHRGGGPAQPPPPPPPP 107
Score = 21.0 bits (42), Expect(2) = 1.2
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = -3
Query: 401 PPVPTPPY 378
PP P PPY
Sbjct: 142 PPAPAPPY 149
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 248 RELMEVSPAPREKPGARRAVANVQKYKDGSDESTSDSDVELL----DNKVESEPEAPRAL 415
RE ++P P E+P A A+ + + +D ++ D++ E L DN +++P APR
Sbjct: 197 REKSGLAPLPVEEPSA--AIMSDDEDEDKMGDADGDTESEKLSQPVDNPSDNKPGAPRCR 254
Query: 416 SLSD 427
SD
Sbjct: 255 LRSD 258
>08_02_1152 +
24720397-24720636,24720739-24720951,24721617-24721697,
24721781-24721867,24721970-24722065,24722179-24722232,
24722326-24723375,24723468-24723507,24723551-24723756
Length = 688
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 302 AVANVQKYKDGSDESTSDSDVELLDNKVESEPEAPRALSLSDDD 433
A+ N + D SDE+T ++ VE NK+E E E R ++S +
Sbjct: 491 AILNKKLGTDRSDETTCEAVVEECVNKMEVETEQSRNSTMSKSE 534
>09_04_0255 - 16146465-16147145
Length = 226
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 266 SPAPREKPGARRAVANVQKYKDGSDESTSDSDVELLDNKVESEPEAPRA 412
SP+ P R A DG+DE DS +DN + E E P A
Sbjct: 94 SPSEPSTPSKVRFTAYYGGEGDGADEGVVDSVRRCVDNDGDGEGETPTA 142
>01_01_0694 + 5372779-5373429
Length = 216
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = -3
Query: 407 AAPPVPTPPYCRGVPRQN---PTWTHQNRL 327
AAPP YC G PR + P W H+ L
Sbjct: 75 AAPPGSVVRYCEGTPRGDGAPPDWAHETLL 104
>04_04_1517 +
34125549-34125634,34125725-34125789,34125878-34126085,
34126819-34126911,34127302-34127389,34127788-34128060
Length = 270
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 269 PAPREKPGARRAVANVQKYKDGSDESTSDSD 361
P+PR RRA N + ++ S+E +D D
Sbjct: 40 PSPRRLSSCRRAAKNERPWRSSSNEQLTDGD 70
>10_01_0016 +
190329-191210,206896-207033,208029-208103,208533-208639,
209193-209250,210183-210242,210320-210394,210504-210641,
211766-211820,212134-212256,212645-212883
Length = 649
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 303 LSPMYRNTKTVLMSPRRI 356
LSP+Y+ TKTV SP R+
Sbjct: 415 LSPVYKVTKTVYASPSRV 432
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 303 LSPMYRNTKTVLMSPRRI 356
LSP+Y+ TKTV SP R+
Sbjct: 460 LSPVYKVTKTVYASPSRV 477
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 317 QKYKDGSDESTSDSDVELLDNKVESE--PEAP 406
++ KD SD++ D D +++NK E E P+ P
Sbjct: 690 EEQKDNSDDNKMDEDHVMVENKEEQEEQPQPP 721
>03_06_0711 - 35682293-35682952
Length = 219
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 269 PAPREKPGARRAVANVQKYKDGSDESTSDSDVELLDNKVESEPE-APRA 412
P+P E A + K K G D+ D D E + S P AP A
Sbjct: 99 PSPMEHSAASAPAPSAAKAKQGGDDEEDDDDKEKDKEEKPSTPSPAPAA 147
>03_03_0014 + 13749178-13750695
Length = 505
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 281 EKPGARRAVANVQKYKDGSDESTSDSDVELLDNKVESEPE 400
+ PG R + +K+ D + + ++SD +++ +E EPE
Sbjct: 190 QAPGFFRDIPGWEKFADDLERARAESDGVVINTVLEMEPE 229
>01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401
Length = 444
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 269 PAPREKPGARRAVANVQKYKDGSDESTSDSDVELLDNK 382
P PR A++ + K K DES SDSD E+ D++
Sbjct: 196 PKPRGGEDAKKLKIWLGKKKVQEDESDSDSDSEMDDDE 233
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 302 AVANVQKYKDGSDESTSDSDVELLDNKVESEPEAPRALSLSDD 430
A+ N+Q YK+ S D+EL D + E E+ + +L D
Sbjct: 589 AIQNLQTYKEKKFVDISKEDLELGDEDEDKENESKQEYTLLCD 631
>09_04_0377 + 17086775-17088310
Length = 511
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 SPAPREKPGARRAVANVQKYKDGSDESTSDSDVELLDNKVESEPEA-PRALSLSD 427
SP K +R + K D D++ SD+D+ + + +EPE P A+ +
Sbjct: 311 SPLRDSKKKSRSSRRKRSKQSDSEDQAPSDADLGVKEIDETNEPEIDPEAIKFKE 365
>07_03_0148 - 14448475-14449053
Length = 192
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 410 LAAPPVPTPPYCRGVPRQN--PTWT 342
+A PP+P PP R V R P WT
Sbjct: 1 MATPPLPPPPRARCVVRLKLPPAWT 25
>02_05_1321 - 35695474-35696161,35696315-35696547
Length = 306
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 254 LMEVSPAPREKPGARRAVANVQKYKDGSDESTSDSDVELLDNKVESEPE 400
+M + RR VA ++ DG+ ESTS D E + + E E
Sbjct: 136 VMSSGSVRKSSSSRRRVVAVIRAVGDGAGESTSGKDEEEEEKRRREELE 184
>02_05_0925 - 32768815-32769654
Length = 279
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 434 HHHR*GRELAAPPVPTPPYCRGVPRQNPTWT 342
HHH GR PP P PP P P WT
Sbjct: 145 HHHIGGRFDHHPPPPPPP---PPPAHYPMWT 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,994,666
Number of Sequences: 37544
Number of extensions: 125655
Number of successful extensions: 902
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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