Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B18
(436 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB075851-1|BAB85557.1| 830|Homo sapiens KIAA1971 protein protein. 25 5.0
AK097947-1|BAC05201.1| 209|Homo sapiens protein ( Homo sapiens ... 25 5.6
BC113371-1|AAI13372.1| 1036|Homo sapiens cysteine rich transmemb... 29 6.9
BC111989-1|AAI11990.1| 1036|Homo sapiens cysteine rich transmemb... 29 6.9
AY358371-1|AAQ88737.1| 1036|Homo sapiens CRIM1 protein. 29 6.9
AF168681-1|AAG37011.1| 925|Homo sapiens CRIM1 protein protein. 29 6.9
AF167706-1|AAF34409.1| 1036|Homo sapiens cysteine-rich repeat-co... 29 6.9
AC007378-1|AAX88862.1| 763|Homo sapiens unknown protein. 29 6.9
AB209139-1|BAD92376.1| 1058|Homo sapiens cysteine-rich motor neu... 29 6.9
BC050072-1|AAH50072.1| 489|Homo sapiens forkhead box G1 protein. 24 8.8
U41371-1|AAA97461.1| 872|Homo sapiens spliceosome associated pr... 29 9.1
U05237-1|AAA97522.1| 810|Homo sapiens FAC1 protein. 29 9.1
BX537771-1|CAD97834.1| 799|Homo sapiens hypothetical protein pr... 29 9.1
BC053577-1|AAH53577.1| 877|Homo sapiens SF3B2 protein protein. 29 9.1
BC007610-1|AAH07610.1| 636|Homo sapiens SF3B2 protein protein. 29 9.1
BC000401-1|AAH00401.2| 894|Homo sapiens SF3B2 protein protein. 29 9.1
AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger ... 29 9.1
AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger ... 29 9.1
>AB075851-1|BAB85557.1| 830|Homo sapiens KIAA1971 protein protein.
Length = 830
Score = 25.4 bits (53), Expect(2) = 5.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 401 PPVPTPPYCRGVPRQNPTWTHQN 333
PP P PP R + + THQN
Sbjct: 672 PPPPPPPPLRALSSSSQAATHQN 694
Score = 22.6 bits (46), Expect(2) = 5.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3
Query: 431 HHR*GRELAAPPVPTPP 381
H + EL+ PP P PP
Sbjct: 650 HSKSSEELSLPPPPPPP 666
>AK097947-1|BAC05201.1| 209|Homo sapiens protein ( Homo sapiens
cDNA FLJ40628 fis, clone THYMU2014204, weakly similar to
WISKOTT-ALDRICH SYNDROME PROTEIN. ).
Length = 209
Score = 25.4 bits (53), Expect(2) = 5.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 401 PPVPTPPYCRGVPRQNPTWTHQN 333
PP P PP R + + THQN
Sbjct: 77 PPPPPPPPLRALSSSSQAATHQN 99
Score = 22.6 bits (46), Expect(2) = 5.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3
Query: 431 HHR*GRELAAPPVPTPP 381
H + EL+ PP P PP
Sbjct: 55 HSKSSEELSLPPPPPPP 71
>BC113371-1|AAI13372.1| 1036|Homo sapiens cysteine rich
transmembrane BMP regulator 1 (chordin-like) protein.
Length = 1036
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 253 ADGGVSGSEGEAWGSQSCRQCT 318
A GG EGE W SC QCT
Sbjct: 681 APGGEYFVEGETWNIDSCTQCT 702
>BC111989-1|AAI11990.1| 1036|Homo sapiens cysteine rich
transmembrane BMP regulator 1 (chordin-like) protein.
Length = 1036
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 253 ADGGVSGSEGEAWGSQSCRQCT 318
A GG EGE W SC QCT
Sbjct: 681 APGGEYFVEGETWNIDSCTQCT 702
>AY358371-1|AAQ88737.1| 1036|Homo sapiens CRIM1 protein.
Length = 1036
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 253 ADGGVSGSEGEAWGSQSCRQCT 318
A GG EGE W SC QCT
Sbjct: 681 APGGEYFVEGETWNIDSCTQCT 702
>AF168681-1|AAG37011.1| 925|Homo sapiens CRIM1 protein protein.
Length = 925
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 253 ADGGVSGSEGEAWGSQSCRQCT 318
A GG EGE W SC QCT
Sbjct: 570 APGGEYFVEGETWNIDSCTQCT 591
>AF167706-1|AAF34409.1| 1036|Homo sapiens cysteine-rich
repeat-containing protein S52 precursor protein.
Length = 1036
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 253 ADGGVSGSEGEAWGSQSCRQCT 318
A GG EGE W SC QCT
Sbjct: 681 APGGEYFVEGETWNIDSCTQCT 702
>AC007378-1|AAX88862.1| 763|Homo sapiens unknown protein.
Length = 763
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 253 ADGGVSGSEGEAWGSQSCRQCT 318
A GG EGE W SC QCT
Sbjct: 570 APGGEYFVEGETWNIDSCTQCT 591
>AB209139-1|BAD92376.1| 1058|Homo sapiens cysteine-rich motor neuron
1 variant protein.
Length = 1058
Score = 29.1 bits (62), Expect = 6.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 253 ADGGVSGSEGEAWGSQSCRQCT 318
A GG EGE W SC QCT
Sbjct: 703 APGGEYFVEGETWNIDSCTQCT 724
>BC050072-1|AAH50072.1| 489|Homo sapiens forkhead box G1 protein.
Length = 489
Score = 24.2 bits (50), Expect(2) = 8.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 401 PPVPTPPYCRGVP 363
PP P PP RG P
Sbjct: 79 PPAPQPPQTRGAP 91
Score = 23.0 bits (47), Expect(2) = 8.8
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = -3
Query: 434 HHHR*GRELAAPPVPTPP 381
HHH PP P PP
Sbjct: 49 HHHHHHHHHPPPPAPQPP 66
>U41371-1|AAA97461.1| 872|Homo sapiens spliceosome associated
protein protein.
Length = 872
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 326 KDGSDESTSDSDVELLDNKVESEPEAPR 409
K G +E DSD + D++ E +PEAP+
Sbjct: 398 KKGFEEEHKDSDDDSSDDEQEKKPEAPK 425
>U05237-1|AAA97522.1| 810|Homo sapiens FAC1 protein.
Length = 810
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 305 VANVQKYKDGSDESTSDSDVELLDNKVESEPEAPRALSLSDDDD 436
V+ ++ +DG E T DS+ + D E + ++ + DDDD
Sbjct: 2 VSEEEEEEDGDAEETQDSEDDEEDEMEEDDDDSDYPEEMEDDDD 45
>BX537771-1|CAD97834.1| 799|Homo sapiens hypothetical protein
protein.
Length = 799
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 326 KDGSDESTSDSDVELLDNKVESEPEAPR 409
K G +E DSD + D++ E +PEAP+
Sbjct: 325 KKGFEEEHKDSDDDSSDDEQEKKPEAPK 352
>BC053577-1|AAH53577.1| 877|Homo sapiens SF3B2 protein protein.
Length = 877
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 326 KDGSDESTSDSDVELLDNKVESEPEAPR 409
K G +E DSD + D++ E +PEAP+
Sbjct: 421 KKGFEEEHKDSDDDSSDDEQEKKPEAPK 448
>BC007610-1|AAH07610.1| 636|Homo sapiens SF3B2 protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 326 KDGSDESTSDSDVELLDNKVESEPEAPR 409
K G +E DSD + D++ E +PEAP+
Sbjct: 162 KKGFEEEHKDSDDDSSDDEQEKKPEAPK 189
>BC000401-1|AAH00401.2| 894|Homo sapiens SF3B2 protein protein.
Length = 894
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 326 KDGSDESTSDSDVELLDNKVESEPEAPR 409
K G +E DSD + D++ E +PEAP+
Sbjct: 420 KKGFEEEHKDSDDDSSDDEQEKKPEAPK 447
>AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger
transcription factor protein.
Length = 2764
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 305 VANVQKYKDGSDESTSDSDVELLDNKVESEPEAPRALSLSDDDD 436
V+ ++ +DG E T DS+ + D E + ++ + DDDD
Sbjct: 2 VSEEEEEEDGDAEETQDSEDDEEDEMEEDDDDSDYPEEMEDDDD 45
>AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger
transcription factor protein.
Length = 2781
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 305 VANVQKYKDGSDESTSDSDVELLDNKVESEPEAPRALSLSDDDD 436
V+ ++ +DG E T DS+ + D E + ++ + DDDD
Sbjct: 2 VSEEEEEEDGDAEETQDSEDDEEDEMEEDDDDSDYPEEMEDDDD 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,777,092
Number of Sequences: 237096
Number of extensions: 638236
Number of successful extensions: 2975
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2970
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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