Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B17
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 28 0.60
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 26 2.4
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 3.2
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 26 3.2
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 4.3
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 25 4.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 4.3
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 5.6
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz... 25 5.6
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 25 7.4
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.4
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 24 9.8
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 24 9.8
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 24 9.8
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 28.3 bits (60), Expect = 0.60
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +1
Query: 76 RNLESFYDRRHVYRYHAVLLRERFDRYAKEPDMRKAVQLLKEGQEELFLNQHPVPKYFAK 255
+ E +Y +++++R + F Y ++P + ++ L H KY+
Sbjct: 26 KQFEGYYKKQNLFRGKPNDEFDSFMEYMRKP-LPTTFRICGYRHHAFELKNH-FEKYYVP 83
Query: 256 SPGGVAHERVVTPPDWILDYWHP 324
S V HE PP +L W+P
Sbjct: 84 SLKNVVHEGQTIPPPTVLP-WYP 105
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 2.4
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -1
Query: 325 KDASSPESNLVESLHARELHLRDSLRNILEQDADSRRXXXXXXXXXXXXXXXXXLWRIYQ 146
++AS+ NLV+ + RELH R R + D +S++ L+ + +
Sbjct: 134 QEASAAARNLVKKVEKRELHSRPPKRKL--DDVESKQILKEARASDASLNAERPLFPVKK 191
Query: 145 ISHGEV 128
I +G V
Sbjct: 192 IINGNV 197
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 451 IIESNGVSPFHHISRILSPTL 389
I + G+SPF +SR+LS T+
Sbjct: 118 IKDKEGLSPFQFLSRVLSSTI 138
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 142 SHGEVLHGSGKHVVYRRTILNCAKPFYKGYI 50
++G GSGK V + N AKPF+ G++
Sbjct: 131 NYGRNESGSGKVAVIEFSSPNIAKPFHAGHL 161
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 274 HERVVTPPDWILDYWHPFEKAQYPE 348
HE + DW Y HP +KA YPE
Sbjct: 138 HEFMNAKGDW--RYVHPGDKASYPE 160
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 166 PDMRKAVQLLKEGQEELFLNQHPVPK 243
P + LL+ E LN+HP+PK
Sbjct: 339 PKLNVKTGLLENSYTEFSLNEHPLPK 364
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 214 LFLN-QHPVPKYFAKSPGGVAHERVVTPPDWILDYWHPFEK 333
+++N + VP++ S +A E + DW LD HPF +
Sbjct: 307 VYMNGSNSVPRFILYSTTHIAPETEIIG-DWTLDISHPFRQ 346
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.0 bits (52), Expect = 5.6
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 KYFAKSP-GGVAHERVVTPPDWILDYWHPFEKAQYPEYFXXXXXXXXXFIAMWEKEYGKC 417
KYF + GGV H+ +T + + Y P EYF I + Y C
Sbjct: 1275 KYFLEGMIGGVLHDAPITCEKFEIHYVDPPPNYSCGEYFSSFLNSSGHGIVYNPEAYSSC 1334
>SPCC1393.11 |||mitochondrial ribosomal protein subunit
L20|Schizosaccharomyces pombe|chr 3|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 308 WTTGILSKKPNTLNI 352
WTTG LSKK NT +
Sbjct: 130 WTTGTLSKKFNTTRL 144
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 7.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 447 LNLMVFLLFITFPVFFLPHCNEFLLP--FLTAFEIFRVLGFFERMPVVQNPIWWSHYTLV 274
L + V ++F F++ CNE P F IF+ F++ ++ +W+S TL+
Sbjct: 22 LGVTVLTTVVSFGSFYI--CNEEGCPAKFSKISHIFKKTPLFDQKSLILYLLWFSTLTLL 79
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +1
Query: 37 HAQKVCNLYKKALRNLESFYDRRHVYRYHAVLLRERFDR 153
H + LY+ +R L++ + H + +H R+DR
Sbjct: 302 HELPIKQLYENVIRRLDNPHIHYHYFDFHKECSHMRWDR 340
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 184 VQLLKEGQEELFLNQHPVPKYFAK 255
VQ L+E +EE + HP P Y +K
Sbjct: 342 VQALRETEEEKYKLPHPNPFYNSK 365
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.2 bits (50), Expect = 9.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 95 TIDDMFTATMQYFSVRDLIDTPKNQTCAKLYN 190
TI ++ T++YF D +D CA L++
Sbjct: 692 TIKNILFTTLEYFLTNDWVDNHLIILCASLHS 723
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 334 LFRKDASSPESNLVESL---HARELHLRDSLRNILEQD 230
+F D S N++ +L H R +H RDS +L Q+
Sbjct: 221 VFAADVSQDALNVMRALCTSHPRGIHWRDSRSYLLSQE 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,129
Number of Sequences: 5004
Number of extensions: 40369
Number of successful extensions: 115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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