Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B17
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0562 + 34732027-34733121 28 3.2
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 28 4.2
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 4.2
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 28 4.2
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 28 4.2
10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854... 27 5.6
04_01_0434 - 5689923-5690078 27 7.3
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 27 7.3
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 27 7.3
09_04_0545 - 18457169-18457399,18457733-18457915,18458012-184582... 27 9.7
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027... 27 9.7
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 27 9.7
01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732... 27 9.7
>03_06_0562 + 34732027-34733121
Length = 364
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 89 RSTIDDMFTATMQYFSVRDLIDTPKNQTCAKL 184
R+++DD+ +A YF V D+ P +Q A L
Sbjct: 28 RTSLDDLPSAATSYFHVADVYSAPPDQLVAGL 59
>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 123 MVAVNMSSIVERF*IAQSLFIKVTYFLCVSSNTKRNV 13
M AV + +R +F+++ YFLC+S N + +
Sbjct: 1072 MTAVTDMELKDRSSFVLDIFLQMVYFLCMSGNVDKAI 1108
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 463 HNYTIIESNGVSPFHHISRILSPTLQ*IPSSFPHGV*NIQGIGLFRKDASSPESNLVESL 284
H + E +G+ P+ + ++ IP+ PH V N++ D SPE N+ E L
Sbjct: 804 HKRKLKEEHGIEPWTFVQKLGEAVF--IPAGCPHQVRNLKSCTKIALDFVSPE-NVKECL 860
Query: 283 HARE 272
E
Sbjct: 861 SLTE 864
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 378 LLPFLTAFEIFRVLGFFERMPVVQNPIW 295
LLP L+A+EI ++L +E VQ +W
Sbjct: 471 LLPSLSAYEIGQLLSIYEHRIAVQGFLW 498
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 378 LLPFLTAFEIFRVLGFFERMPVVQNPIW 295
LLP L+A+EI ++L +E VQ +W
Sbjct: 484 LLPSLSAYEIGQLLAIYEHRIAVQGFLW 511
>10_08_0001 +
13984436-13984514,13984804-13984926,13985181-13985468,
13985560-13985690,13985764-13985979,13986059-13986442
Length = 406
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -3
Query: 389 AMNSFFLSSRRLKYSGYWAFSKGCQ*SRIQSGGVTTRS*ATPPGLFAKYFGTGC 228
A + +S L +SGYWAF G Q I S R LFA TGC
Sbjct: 225 AYSIIVMSYWTLAFSGYWAFGSGVQ-PYILSSLTFPRWTIVMANLFAVIQITGC 277
>04_01_0434 - 5689923-5690078
Length = 51
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 329 KKPNTLNISNAVRKGRRNSLQCGRKNTGNVMKRRNTI 439
++ NT + A + +RN++ RK V ++RNT+
Sbjct: 9 RRRNTAVVDTATTERKRNTVALERKRNTAVARKRNTV 45
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 349 IQGIGLFRKDASSPESNLVESLHARELHLRDSLRNILEQDADSR 218
++ +G F+ +A VE ++ + + DS+R + EQD DSR
Sbjct: 732 LEHVGNFKAEAKVALRR-VELVYYKPQEVYDSMRKLAEQDEDSR 774
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +1
Query: 190 LLKEGQEELF-----LNQHPVPKYFAKSPGGVAHERVVTPPDWILD 312
LLK G + ++ N H V +YF PG E P W+LD
Sbjct: 1132 LLKRGGQVIYSGPLGTNSHKVVEYFEAIPGVPKIEENRNPATWMLD 1177
>09_04_0545 -
18457169-18457399,18457733-18457915,18458012-18458227,
18459050-18459610
Length = 396
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 228 LIQEELFLPFFEQLYSFAHVWFFG 157
L+ EELF FE+ Y H +F+G
Sbjct: 68 LLPEELFFAEFERRYGGRHPFFYG 91
>02_05_1324 -
35702184-35702267,35702405-35702476,35702675-35702740,
35702826-35702857,35702941-35703100,35703254-35703389,
35703453-35703598,35703827-35704072,35704152-35704259,
35704436-35704557,35704730-35704820,35704903-35705133,
35705212-35705355,35705875-35705951,35706158-35706281,
35706368-35706535,35706625-35706948
Length = 776
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 376 SSFPHGV*NIQGIGLFRKDASSPESNLVE--SLHARELHLRDSLRNILEQD 230
+S+ H V +++ + F K+++SPE+N + L LR+S +I E+D
Sbjct: 379 ASWDHAVKDMEDLKAFAKESASPEANDLAHWDLSFWSERLRESKYDINEED 429
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = -2
Query: 402 FLPHCNEFLLPFLTAFEIFRVLGFFERMPVVQNPIWWSHYT-LVSYTSGTLCEIFWNRML 226
FL C PFLT E FR +P + + W ++ V Y + T C + R
Sbjct: 97 FLTDCKRRESPFLTRRERFRNEFMRRVVPWEKGNLTWQNFPYYVKYDARTTCSVLCLRTE 156
Query: 225 IQEE 214
+ E
Sbjct: 157 LYRE 160
>01_01_0926 +
7324145-7324561,7324773-7324778,7325255-7325311,
7325572-7325661,7325938-7325982,7326088-7326142,
7326245-7326288,7326401-7326790,7327276-7327541,
7328292-7328430,7328514-7328564,7329158-7329642,
7329724-7330327,7330717-7331025
Length = 985
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 133 EVLHGSGKHVVYRRTILNCAKPFYKGYILFVRE 35
+VLH SG V+Y +L+C + F G +L +E
Sbjct: 814 DVLHESGLEVLYSVPVLHCPQAF--GVVLRAKE 844
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,300,369
Number of Sequences: 37544
Number of extensions: 249501
Number of successful extensions: 691
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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