Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B17
(463 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007672-1|AAH07672.1| 179|Homo sapiens NADH dehydrogenase (ubi... 132 7e-31
AF261090-1|AAF99683.1| 179|Homo sapiens NADH-ubiquinone dehydro... 132 7e-31
AF044956-1|AAD42057.1| 179|Homo sapiens NADH:ubiquinone oxidore... 132 7e-31
S82655-1|AAB46797.2| 102|Homo sapiens NADH-ubiquinone oxidoredu... 56 8e-08
AK026214-1|BAB15397.1| 226|Homo sapiens protein ( Homo sapiens ... 31 2.5
AJ404670-1|CAC18878.1| 226|Homo sapiens hypothetical protein pr... 31 2.5
AF126964-1|AAG43247.1| 697|Homo sapiens C3HC4-type zinc finger ... 31 2.5
AF474987-1|AAL86878.2| 322|Homo sapiens G protein-coupled recep... 29 7.8
>BC007672-1|AAH07672.1| 179|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 9, 22kDa protein.
Length = 179
Score = 132 bits (318), Expect = 7e-31
Identities = 64/133 (48%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Frame = +1
Query: 34 THAQKVCNLYKKALRNLESFYDRRHVYRYHAVLLRERFDRYAKEPDMRKAVQLLKEGQEE 213
TH QKV LYK+ALR+LES+ +R YRY A L+R RF+ + E DM KA QLLKE +EE
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 214 LFLNQHPVPKYFAKSPGGVAHER--VVTPPDWILDYWHPFEKAQYPEYFXXXXXXXXXFI 387
+ QHP P F SPGG ++ER P+W LD WHP EKA YP+YF
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRR 130
Query: 388 AMWEKEYGKCDEK 426
WE+E + E+
Sbjct: 131 ESWEREVKQLQEE 143
>AF261090-1|AAF99683.1| 179|Homo sapiens NADH-ubiquinone
dehydrogenase 1 beta subcomplex protein.
Length = 179
Score = 132 bits (318), Expect = 7e-31
Identities = 64/133 (48%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Frame = +1
Query: 34 THAQKVCNLYKKALRNLESFYDRRHVYRYHAVLLRERFDRYAKEPDMRKAVQLLKEGQEE 213
TH QKV LYK+ALR+LES+ +R YRY A L+R RF+ + E DM KA QLLKE +EE
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 214 LFLNQHPVPKYFAKSPGGVAHER--VVTPPDWILDYWHPFEKAQYPEYFXXXXXXXXXFI 387
+ QHP P F SPGG ++ER P+W LD WHP EKA YP+YF
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRR 130
Query: 388 AMWEKEYGKCDEK 426
WE+E + E+
Sbjct: 131 ESWEREVKQLQEE 143
>AF044956-1|AAD42057.1| 179|Homo sapiens NADH:ubiquinone
oxidoreductase B22 subunit protein.
Length = 179
Score = 132 bits (318), Expect = 7e-31
Identities = 64/133 (48%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Frame = +1
Query: 34 THAQKVCNLYKKALRNLESFYDRRHVYRYHAVLLRERFDRYAKEPDMRKAVQLLKEGQEE 213
TH QKV LYK+ALR+LES+ +R YRY A L+R RF+ + E DM KA QLLKE +EE
Sbjct: 11 THQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEE 70
Query: 214 LFLNQHPVPKYFAKSPGGVAHER--VVTPPDWILDYWHPFEKAQYPEYFXXXXXXXXXFI 387
+ QHP P F SPGG ++ER P+W LD WHP EKA YP+YF
Sbjct: 71 FWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRR 130
Query: 388 AMWEKEYGKCDEK 426
WE+E + E+
Sbjct: 131 ESWEREVKQLQEE 143
>S82655-1|AAB46797.2| 102|Homo sapiens NADH-ubiquinone
oxidoreductase B22 subunit protein.
Length = 102
Score = 55.6 bits (128), Expect = 8e-08
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 238 PKYFAKSPGGVAHERV--VTPPDWILDYWHPFEKAQYPEYFXXXXXXXXXFIAMWEKEYG 411
P F SPGG ++ER P+W LD WHP EKA YP+YF WE+E
Sbjct: 2 PYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVK 61
Query: 412 KCDEK 426
+ E+
Sbjct: 62 QLQEE 66
>AK026214-1|BAB15397.1| 226|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22561 fis, clone HSI01788. ).
Length = 226
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 73 LRNLESFYDRRHVYRYHAVLLRERFDRYAKEPDMRKAV 186
+ N +SFY R YR H L+E+F++Y + D ++ +
Sbjct: 181 MANNQSFYSNREQYRQH---LKEKFNKYCRLNDHKRPI 215
>AJ404670-1|CAC18878.1| 226|Homo sapiens hypothetical protein
protein.
Length = 226
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 73 LRNLESFYDRRHVYRYHAVLLRERFDRYAKEPDMRKAV 186
+ N +SFY R YR H L+E+F++Y + D ++ +
Sbjct: 181 MANNQSFYSNREQYRQH---LKEKFNKYCRLNDHKRPI 215
>AF126964-1|AAG43247.1| 697|Homo sapiens C3HC4-type zinc finger
protein protein.
Length = 697
Score = 30.7 bits (66), Expect = 2.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 73 LRNLESFYDRRHVYRYHAVLLRERFDRYAKEPDMRKAV 186
+ N +SFY R YR H L+E+F++Y + D ++ +
Sbjct: 652 MANNQSFYSNREQYRQH---LKEKFNKYCRLNDHKRPI 686
>AF474987-1|AAL86878.2| 322|Homo sapiens G protein-coupled receptor
SNSR1 protein.
Length = 322
Score = 29.1 bits (62), Expect = 7.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 327 ERMPVVQNPIWWSHYTLVSYTSGTLCEIFWNRMLIQEELFLPFFEQLYSFAH-VW 166
ER + PIW+ H Y S +C + W L++ L F + L+S A+ VW
Sbjct: 119 ERCLSILWPIWY-HCRRPRYLSSVMCVLLWALSLLRSILEWMFCDFLFSGANSVW 172
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,651,367
Number of Sequences: 237096
Number of extensions: 1425053
Number of successful extensions: 6827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6823
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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