Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B17
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    82   2e-16
U97408-2|AAB93342.1|  230|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine r...    29   2.1  
AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm rece...    28   2.8  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm rec...    27   6.5  

>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
 Frame = +1

Query: 34  THAQKVCNLYKKALRNLESFYDRRHV-YRYHAVLLRERFDRYAKEPDMRKAVQLLKEGQE 210
           +H QKV  LYK+ LR ++++Y   ++  R+   ++R RFD  A E D RK+  LL +G  
Sbjct: 13  SHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQILLADGCR 72

Query: 211 ELFLNQHPVPKYFAKSPGGVAHERVVTPPDWIL--DYWHPFEKAQYPEYFXXXXXXXXXF 384
           +L+  +H  P  FA  PGG +++R    PD I+  D W   E+ Q+P YF          
Sbjct: 73  QLWEKRHFKPFRFALDPGGSSYDRERESPDEIVDSDQWTLAEREQFPYYFNTREQRKKEL 132

Query: 385 IAMWEKEYGKCDEK 426
           +  W K     DE+
Sbjct: 133 LTHWAKIEKAWDEE 146


>U97408-2|AAB93342.1|  230|Caenorhabditis elegans Hypothetical
           protein F48A9.2 protein.
          Length = 230

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 163 EPDMRKAVQLLKEGQEELFLNQHPVPKYFAKSPGGVAHERVVTPPDWILDYWHPFEKAQY 342
           E D + +++L K   E LFL  +   KYF K+P    H   V+ P     + +P  +  Y
Sbjct: 2   EKDRKNSIELDKNLAENLFLTLNIFFKYFLKNP----HSFFVSSPSMRGSHGYPPSRGNY 57

Query: 343 PEY 351
             Y
Sbjct: 58  DTY 60


>U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical
           protein C42D4.11 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 25  GIRTHAQKVCNLYKKALRNLESFYDRRHVYRYHAVLLRERFDRYAKEPDMRKAV 186
           G    A K CN Y  AL  LE+  +  H+++    L+    +RY  +P + + +
Sbjct: 151 GTHVEASKACNEYNAALTGLETENETYHIWKTAYSLV----ERYPSQPKITERI 200


>AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 57 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -2

Query: 402 FLPHCNEFLLP-FLTAFEIFRVLGFFERMPVVQNPIWWSHYTLVSYTSGTLCEIFWNRML 226
           F+  C EF +P FLT  + F +  FF  M  +   +   H  + S      CE FW R  
Sbjct: 89  FMLRCVEFYVPSFLTLSKYFSL--FFNNMQFLLAAVLNIH-RISSILFPMSCEKFWCRYY 145

Query: 225 IQEELFLPFFEQLYSFAHVWFFGVSIK 145
           I   L    +  L  F     F V +K
Sbjct: 146 ILVTLAFCIYSYLPRFLWASKFTVEVK 172


>AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm
           receptor protein 39 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 423 FITFPVFFLPHCNEFLLPFLTAFEIFRVLGFFERMPVV 310
           FIT   FF    +  LL F+T F + +++G +++M ++
Sbjct: 8   FITVTSFFATLFSNLLLIFITTFYVKQIVGSYKKMIIL 45


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 417  TFPVFFLPHCNEFLLPFL 364
            TFP+ FLP C   LLPF+
Sbjct: 1522 TFPINFLPTCIHELLPFI 1539


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 417  TFPVFFLPHCNEFLLPFL 364
            TFP+ FLP C   LLPF+
Sbjct: 1522 TFPINFLPTCIHELLPFI 1539


>Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.6 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
 Frame = -2

Query: 390 CNEFLLPFLTAFEIFRVLGF-----FERMPVVQNPIWWSHYTLVSYTSGTLCEIFWNRML 226
           C   +L  +T    +R L         R  V   PIW      +S+   ++C        
Sbjct: 99  CYNIMLQLITIHFYYRYLSVTSPTDLSRFSVKSTPIWILFIISISFLWFSMCYFVNGPSP 158

Query: 225 IQEELFLPFFEQLY 184
           +++E FLP F++ Y
Sbjct: 159 MKDENFLPEFQKNY 172


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
 Frame = +1

Query: 94  YDRRHVYRYHAVLLRERFDRYAKE-------PDMRKAVQLLKEGQEELFLNQHPVPKYFA 252
           ++  +V ++ A    ERFD  A +       P + +A + LKE    L   QH +P+YF 
Sbjct: 104 FNGSNVRKFGAKYSWERFDHEADQERINNLYPAVLRATRRLKESHP-LDNQQHVIPEYFV 162

Query: 253 KSPGGVAHERVVTP-PDWILD 312
           +S        + TP P+  LD
Sbjct: 163 QSYENAIEYLLKTPRPNGPLD 183


>AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm
           receptor protein 41 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 432 FLLFITFPVFFLPHCNEFLLPFLTAFEIFRVLGFFERMPVV 310
           F +F   P+F     N FLL +LT F++ +++G ++ M ++
Sbjct: 8   FEVFTKVPIFITIVSN-FLLIYLTIFQVKQIVGTYKYMIIL 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,774
Number of Sequences: 27780
Number of extensions: 225093
Number of successful extensions: 648
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)