Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B16
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   1.2  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   1.6  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    26   3.6  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    25   6.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.4  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 85  RQPRADPRLTHHNQSGXXXXXXXXQTDDESSVLDSQDVSSADRDSA 222
           +QP  +  LT  +++          ++  SSV DS D+SS    S+
Sbjct: 245 QQPELNSLLTSQSKNSTPSESDSSSSESSSSVSDSSDLSSTSDSSS 290


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 8   AGTGGRVSPPALASRTDAATPRTSTSDSPA 97
           A TG     PA    T  A P +STS +PA
Sbjct: 167 ASTGSLFGKPAATGTTSNAPPASSTSTTPA 196


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 19  GAGVATGAGVENGRGHPAHLNQRQPRADP 105
           G G A+G G  +GRGH     +R  R  P
Sbjct: 18  GRGPASGLGKTSGRGHKGSGQRRGRRIKP 46


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 7   GGDRGAGVATGAGVENGRGHPAHLNQRQPRADPRLTHHNQS 129
           GG+RG G++    + N +G     + R+P A  +L   ++S
Sbjct: 12  GGNRGIGLSLVKELSNRKGTVVFASARKPGAATKLQEWSKS 52


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 56  PFSTPAPVATPAPRSPP 6
           P   PAPVA PAP + P
Sbjct: 893 PAPIPAPVAEPAPPAAP 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.305    0.123    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,986
Number of Sequences: 5004
Number of extensions: 8105
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)