Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B16
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0230 + 19543410-19543722,19544165-19544238 32 0.22
08_02_0527 + 18212938-18213257,18213352-18213991 30 0.90
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 29 2.1
07_01_0034 + 290094-290265,290378-290793 28 3.6
03_02_1007 + 13160772-13161311 28 3.6
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 28 3.6
11_04_0008 + 12115147-12115354,12115397-12116130 28 4.8
11_04_0353 + 16690594-16691502 27 6.3
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 27 6.3
05_03_0296 - 11875922-11876378,11876705-11877045 27 6.3
03_04_0084 - 17153428-17153502,17154158-17154433 27 6.3
02_01_0016 + 110796-110979,111252-111768,111847-112213 27 6.3
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 27 6.3
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 27 8.4
10_08_0227 - 16004868-16005449 27 8.4
09_06_0368 + 22606603-22606735,22606823-22607169 27 8.4
09_04_0180 + 15367737-15367755,15368874-15369739 27 8.4
09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902 27 8.4
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185... 27 8.4
01_07_0058 + 40799547-40799810,40799942-40799978,40800279-408003... 27 8.4
>01_05_0230 + 19543410-19543722,19544165-19544238
Length = 128
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = -3
Query: 110 RRGSARGCRWLRCAGWPRPFSTPAPVATPAPRSPP 6
R G+A R LRC P P PAP +TP P SPP
Sbjct: 44 REGAAHPLR-LRCRRRPSP--PPAPPSTPPPASPP 75
>08_02_0527 + 18212938-18213257,18213352-18213991
Length = 319
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 76 LNQRQPRADPRLTHHNQSGXXXXXXXXQTDDESSVLD 186
L + PR R TH N G +TDD++S+ D
Sbjct: 144 LGAKHPRGYYRCTHRNTQGCTATKQVQRTDDDASLFD 180
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 16 RGAGVATGAGVENGRGHPAHLNQRQP 93
RG G A G G G GHP Q+QP
Sbjct: 23 RGRGPAGGRGGGRGGGHPQQQQQQQP 48
>07_01_0034 + 290094-290265,290378-290793
Length = 195
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 32 PPALASRTDAATPRTSTSDSPAPTRAS 112
PPA++S T+ TS + SPAP+ AS
Sbjct: 145 PPAVSSPTEEMPAVTSPTGSPAPSSAS 171
>03_02_1007 + 13160772-13161311
Length = 179
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPP 6
P P + P+PV PAP +PP
Sbjct: 6 PHPPAPPSPVQAPAPAAPP 24
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPPR 3
PRP P P+ P P PPR
Sbjct: 276 PRPIDPPRPIDPPRPIDPPR 295
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPPR 3
PRP P P+ P P PPR
Sbjct: 282 PRPIDPPRPIDPPRPIDPPR 301
>11_04_0008 + 12115147-12115354,12115397-12116130
Length = 313
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 1 ARGGDRGAGVATGAGVENGRGHPAHLNQRQPRA 99
A GG RG +A G G G ++QR+P A
Sbjct: 161 AGGGRRGTRLAAGVGFAQGLQRGCRVSQREPGA 193
>11_04_0353 + 16690594-16691502
Length = 302
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 8 AGTGGRVSPPALASRTDAATPRTSTSDSPAPTRA 109
A +G SPP LA+ DAA +T P +RA
Sbjct: 46 APSGSGYSPPGLAALADAAVRYATTPTVPQQSRA 79
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 7 GGDRGAGVATGAGVENGRG 63
GG RG+G++ G + GRG
Sbjct: 68 GGGRGSGISRGVAIRRGRG 86
>05_03_0296 - 11875922-11876378,11876705-11877045
Length = 265
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 4 RGGDRGAGVATGAGVENGRGHPA--HLNQRQPRAD 102
R G G G G+G +GRG PA L QR+ RA+
Sbjct: 223 RVGRAGEGRGEGSGRASGRGAPALLQLCQRESRAE 257
>03_04_0084 - 17153428-17153502,17154158-17154433
Length = 116
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPP 6
P+P + PAP A PAP P
Sbjct: 24 PKPAAKPAPAAAPAPAPAP 42
>02_01_0016 + 110796-110979,111252-111768,111847-112213
Length = 355
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPP 6
P P P PV++PAP PP
Sbjct: 172 PTPIIAPPPVSSPAPPLPP 190
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 29 SPPALASRTDAATPRTSTSDSPAP 100
+PPAL T A +P+ S+S P P
Sbjct: 289 TPPALPPATTAPSPKNSSSSPPPP 312
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 28 VATGAGVENGRGHPAHLNQRQPRADPRLTHHNQSG 132
+A GAG GR P H + + A P H +G
Sbjct: 4 IAGGAGSSEGRRRPRHRGEAKASAVPACYHRPSAG 38
>10_08_0227 - 16004868-16005449
Length = 193
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 4 RGGDRGAGVATGAGVENGRGH 66
+GG G G G GV NG G+
Sbjct: 36 QGGGNGGGYVNGGGVGNGNGY 56
>09_06_0368 + 22606603-22606735,22606823-22607169
Length = 159
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 50 STPAPVATPAPRSPP 6
S PAPVAT P SPP
Sbjct: 121 SAPAPVATTTPPSPP 135
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPPR 3
P P TP P+ TP P PPR
Sbjct: 177 PEP-PTPKPIPTPIPSPPPR 195
>09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902
Length = 361
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 61 GHPAHLNQRQPRADPRLTHHNQSGXXXXXXXXQTDDESSVLD 186
G L + PR R TH + G +TD++++V D
Sbjct: 135 GQKEILGAKHPRGYYRCTHRHSQGCMATKQVQRTDEDATVFD 176
>02_01_0278 -
1851338-1851412,1851579-1851819,1851946-1852047,
1852291-1852364,1852455-1852592,1852848-1853003,
1853364-1853513,1853808-1853867,1853946-1854073,
1854209-1854617,1855571-1855628,1856435-1856493,
1857478-1857606,1857765-1857774,1858134-1858183,
1858633-1858854
Length = 686
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPP 6
P PF+ PA + PA SPP
Sbjct: 47 PGPFALPAAIRVPARNSPP 65
>01_07_0058 +
40799547-40799810,40799942-40799978,40800279-40800362,
40800563-40800615
Length = 145
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3
Query: 41 APVATPAPRSPPR 3
AP+A+PAP SPPR
Sbjct: 31 APLASPAPSSPPR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.305 0.123 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,890,000
Number of Sequences: 37544
Number of extensions: 130030
Number of successful extensions: 1154
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
- SilkBase 1999-2023 -