Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B16
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical p... 27 5.7
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 27 5.7
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 27 5.7
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 27 5.7
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 7.6
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 7.6
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 27 10.0
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 27 10.0
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 27 10.0
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 27 10.0
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 27 10.0
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 27 10.0
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z71265-3|CAA95835.2| 403|Caenorhabditis elegans Hypothetical
protein M05B5.3 protein.
Length = 403
Score = 31.1 bits (67), Expect = 0.46
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +2
Query: 32 PPALASRTDAATPRT---STSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSP 202
PP+ T + TP T STSD APT AS P S A P
Sbjct: 230 PPSTTPETSSTTPSTVTSSTSDPNAPT-ASDAASGTGTGTESSDTPASSAPPTSAASGPP 288
Query: 203 AP 208
AP
Sbjct: 289 AP 290
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 74 CAGWPRPFSTPAPVATPAPRSPP 6
C G PRP + P PAP PP
Sbjct: 70 CCGAPRPSPSCCPYVPPAPLPPP 92
>Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical
protein T21C9.9 protein.
Length = 391
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -3
Query: 62 PRP--FSTPAPVATPAPRSPPR 3
PRP S PAP PAP PPR
Sbjct: 104 PRPQYISRPAPRPAPAPYQPPR 125
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 10 GDRGAGVATGAGVENGRGHPAHLNQRQPR 96
GDRG G GA + RG RQPR
Sbjct: 604 GDRGQGPDFGARSQGNRGQGPAFESRQPR 632
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/63 (22%), Positives = 22/63 (34%)
Frame = +2
Query: 29 SPPALASRTDAATPRTSTSDSPAPTRASHXXXXXXXXXXXXXXXXXXXXPCSTARTSPAP 208
+P S +A P + ++PAP S P S A + AP
Sbjct: 274 TPAPATSSEEAPAPAPTAEETPAPETVSAAPEAANSYDSAGGDAATAPAPSSEAADAAAP 333
Query: 209 TET 217
T++
Sbjct: 334 TDS 336
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 23 RVSPPALASRTDAATPRTSTSDSPAPTRAS 112
R SPP ++ T P +S+S +P P R S
Sbjct: 167 RYSPPPSSTPTPTPPPSSSSSPTPTPLRRS 196
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 74 CAGWPRPFSTPAPVATPAPRSPP 6
C P P S P V TP P PP
Sbjct: 332 CISVPAPTSQPVQVMTPPPTLPP 354
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 74 CAGWPRPFSTPAPVATPAPRSPP 6
C P P S P V TP P PP
Sbjct: 429 CISVPAPTSQPVQVMTPPPTLPP 451
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPPR 3
P+ TPAPV P P + PR
Sbjct: 406 PKVAQTPAPVPVPTPAAAPR 425
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 68 GWPRPFSTPAPVATPAPRSP 9
GWP P P P P P P
Sbjct: 271 GWPGPPGAPGPGGMPGPNGP 290
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 68 GWPRPFSTPAPVATPAPRSP 9
GWP P P P P P P
Sbjct: 271 GWPGPPGAPGPGGMPGPNGP 290
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPPR 3
P+ TPAPV P P + PR
Sbjct: 406 PKVAQTPAPVPVPTPAAAPR 425
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPP 6
P P TP P+ P P PP
Sbjct: 155 PTPIPTPVPILEPPPPPPP 173
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 62 PRPFSTPAPVATPAPRSPPR 3
P+ TPAPV P P + PR
Sbjct: 406 PKVAQTPAPVPVPTPAAAPR 425
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 59 RPFSTPAPVATPAPRSPP 6
RP TPAP+ P +SPP
Sbjct: 580 RPPPTPAPITPPKSQSPP 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.305 0.123 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,631,076
Number of Sequences: 27780
Number of extensions: 66577
Number of successful extensions: 473
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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