Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B15
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 32 0.33
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899... 31 0.76
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 30 1.3
09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548 29 1.8
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 2.3
11_06_0610 - 25449085-25453284 29 3.1
11_02_0047 + 7716315-7716420,7716518-7716647,7716785-7716856,771... 28 4.1
11_01_0522 - 4103138-4103926 28 4.1
07_03_1681 + 28624899-28625075,28625224-28625400,28625508-286256... 28 4.1
04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562... 28 4.1
03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967... 28 4.1
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 28 5.4
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 28 5.4
12_02_0305 - 17235832-17236379,17237345-17237444 27 7.1
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 27 7.1
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 27 7.1
01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869 27 7.1
12_02_0304 + 17112677-17113195 27 9.4
11_06_0478 + 24073295-24074172,24074790-24075090 27 9.4
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 27 9.4
01_06_1420 + 37229111-37229601,37229682-37230084 27 9.4
>10_08_0747 - 20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +2
Query: 191 PTSQHLSRQTSSIDTYNSHRKIKRPKLIG---------DKKVYRPVRRHTLSRIDETPPQ 343
P HL+ + +D+ NSHR +K KL G D+ +H L +++
Sbjct: 942 PVVVHLASEKCFVDSGNSHRAMKDKKLAGGSGSKSVQTDRAAKIAAIKHKLKSLEDEGCS 1001
Query: 344 TVRPRSKS 367
T RPR KS
Sbjct: 1002 TKRPRFKS 1009
>01_07_0101 +
41086735-41086809,41088634-41088721,41089727-41089923,
41090077-41090266,41090469-41090860,41091390-41091965
Length = 505
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 401 PILRSRSNISADTSRSVPVCNQSHETVNQPEHGSP 505
P+ SRSN S +R++ N+ +V P H SP
Sbjct: 383 PVQHSRSNSSTPRARNLAGWNEDRRSVRSPNHHSP 417
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 318 DRVCRLTGRYTFLSPISFGLLIFRWELYVSMEEVCRERCWEV 193
DRV R G + + SP ++ + ++ M ++ R CW++
Sbjct: 293 DRVLRPGGYFVYSSPEAYAMDPINRNIWRKMSDLARRMCWQI 334
>09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548
Length = 487
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 245 HRKIKRPKLIGDKKVYRPVRRHTLSRIDETPPQTVRPRSKSLQNSVD 385
H ++R + GD++ RPVR TL+++D + R +SL NSV+
Sbjct: 91 HWYLRRRRTAGDRR--RPVRVSTLNKLDVIIGRYERHGMRSLANSVN 135
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 311 TLSRIDETPPQTVRPRSKSLQNSVDISSTRPILRSRSNISADTSRSVPVCNQSHE 475
T I E+ PQ + +S+Q+ D +T P L S NI + + SVP N + E
Sbjct: 884 TEESITESEPQILE--IESVQDMEDTEATEPELVSEQNIVSTSEESVPEENATTE 936
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 3.1
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Frame = +2
Query: 164 PQAPARNNPPTSQHLSRQTSSIDTY-NSHRKIKRPKLIGDKKVYRPVRRHTLSRIDETPP 340
P +PA++ PP + L T +I++ S + P + K P + S+ +P
Sbjct: 983 PPSPAKSTPPPEKPLPPHTPTINSSPPSEEEYMPPSPV--KSSPPPAEK---SQPPPSPV 1037
Query: 341 QTVRPRSKSLQNSVDISSTRPILRSRSNISADTSRSVPV-CNQSHETVNQPEHGSPQY-- 511
++V P KS + S P +S TS P + HE ++ PE Y
Sbjct: 1038 ESVLPPVKSSPPHAPVISEPPPTKSSPPQVPVTSEPPPAKSSPPHEPISPPETPEKSYPP 1097
Query: 512 AEPKDS 529
+ P++S
Sbjct: 1098 STPEES 1103
>11_02_0047 +
7716315-7716420,7716518-7716647,7716785-7716856,
7717007-7717078,7717274-7717345,7717684-7717845,
7718105-7718176,7718435-7718503,7718788-7718859,
7718992-7719129,7719386-7719888,7720007-7720171,
7720267-7720403,7720488-7720707,7720793-7721028,
7721165-7721632
Length = 897
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 369 KLFDRGRTVCGGVSSIRDRVCRLTGRYTFLSPISFGLLIFRWELYVSMEEVCRE 208
K +RGR + V DR L G + L P+ + +ELYV + C E
Sbjct: 776 KPLERGRYIVREVKGAMDRTKDLYGLHELLDPMLAPTSLAGFELYVDLALKCVE 829
>11_01_0522 - 4103138-4103926
Length = 262
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 366 ACRTRLTSRP-RDRYYGPGRTYRQTRVGACPFATRATKR*TSPNM 497
ACR+ ++ P R RY G G YR A RAT T+P++
Sbjct: 119 ACRSAASASPCRSRYAGGGSAYRPRPTAFLDLAPRAT---TAPDL 160
>07_03_1681 +
28624899-28625075,28625224-28625400,28625508-28625673,
28625761-28626152
Length = 303
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 286 SVPAGKATYPVSNRRDASADGPAPIKELAEL-G*HLVHATDITVQVEHIGRHESERARLQ 462
+V G+ +N A+ D PAP LAEL G D+T V G H +A+ Q
Sbjct: 125 TVLLGRRDSTTANESQANTDLPAPSSSLAELIGNFSRKGLDVTDMVALSGAHTIGQAQCQ 184
>04_04_0802 -
28155281-28155725,28155750-28156081,28156164-28156266,
28156347-28156528,28156617-28156800,28156872-28156960,
28157634-28157710,28157837-28157927,28158230-28158430
Length = 567
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 83 SQYGPYNY*ACDQMRDIEAAHFANAAGPQAPARNNPPTSQHLSRQTSSIDTYNSHRKIKR 262
S+ +Y CD+ + N A A RN+ TS H+ ++ + Y H++ R
Sbjct: 388 SRMAALDYIVCDKSDVFVTNNNGNMARMLAGRRNSLGTSGHILKRKLNFRRYFGHKRTIR 447
Query: 263 PKLIGDKKVY 292
P KK+Y
Sbjct: 448 PNA---KKLY 454
>03_05_0813 -
27894593-27894915,27896164-27896422,27896513-27896728,
27896920-27897625,27897895-27898100
Length = 569
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 495 CSGWFTVSWLWLQTGTLRLVSADMFDLDRNIGRVDEMSTEFC 370
CS + WL + LR+V + + I R D +S FC
Sbjct: 257 CSPDQAMGWLQMANADLRIVDPALGYMSNKITRTDNISMSFC 298
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 191 PTSQHLSRQTSSIDTYNSHRKIKRPKLIGDKKVYRPVRRHTLSRIDETPPQTVRPRSKSL 370
P Q L Q TY +H K + + IG++ + R + T QT +PR+++L
Sbjct: 430 PEYQRLVDQELWRQTYVNHAKRRTDRTIGEEGLSRLHNSELSPSQNRTNAQTGKPRTRTL 489
Query: 371 Q 373
+
Sbjct: 490 E 490
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/106 (22%), Positives = 45/106 (42%)
Frame = +2
Query: 188 PPTSQHLSRQTSSIDTYNSHRKIKRPKLIGDKKVYRPVRRHTLSRIDETPPQTVRPRSKS 367
P +S + S + N+HR R + + + V PV+ + + + + +K
Sbjct: 270 PKSSSTSVEEQSPLIQRNNHRD--RGQYV--RPVLNPVQNMSQWKEVKAQAAPAKKSNKE 325
Query: 368 LQNSVDISSTRPILRSRSNISADTSRSVPVCNQSHETVNQPEHGSP 505
NSV P + +S D S S + + + TV++ + GSP
Sbjct: 326 NVNSVPKVGATPENSIKKEVSVDASLSTWLVSSDNSTVDKVQSGSP 371
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 146 FANAAGPQAPARNNPPTSQHLSRQTS 223
FA A PQ P R NPP + R+ S
Sbjct: 64 FAQAKQPQTPPRRNPPRAPPSPRRAS 89
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Frame = +2
Query: 296 PVRRHTLSRIDETPPQTVRPRSKSLQNSVDISSTRPILRSRSNISADTSRSVPVC--NQS 469
P RH ++ +P + + T PI + +DT+ + C + S
Sbjct: 12 PSERHRSPKVKRQRSAAAQPLGDVTNLLLPSTPTNPITARPRPLPSDTTAAASTCSASPS 71
Query: 470 HETVNQPEHGSPQYAEPKDS 529
H V++P + + A P+ +
Sbjct: 72 HTPVSKPSSATGETAAPQSN 91
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = +2
Query: 128 DIEAAHFANAAGPQ--APARNNPPTSQHLSRQTSSIDTYNSHRKIKRPKLIGDKKVYRPV 301
D+EA H G AP+ +NP + D +N H I + G
Sbjct: 241 DVEAPHSVVVVGGDVCAPSSSNPDAAVPAMMPLPHFDHHNHHHPIHGGRERGSSPAEADH 300
Query: 302 RRHTLSRIDETPPQ 343
RH PPQ
Sbjct: 301 HRHHQQEQPPPPPQ 314
>01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869
Length = 400
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = -3
Query: 521 SAPRTVDYHVRAGSPFRGSGCKRARSDSCLPICSTWTVISVAWTRCQPSSASSLIGAGPS 342
S+P T HV++ S +G D C+ + + + V C P S+ G
Sbjct: 195 SSPNTDGIHVQSSSAVTITGASIQTGDDCISVGPGTSNLRVEHVSCGPGHGISIGSLGKE 254
Query: 341 AE 336
+E
Sbjct: 255 SE 256
>12_02_0304 + 17112677-17113195
Length = 172
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 146 FANAAGPQAPARNNPPTSQHLSRQTSS 226
FA A PQ P R NPP + R+ S
Sbjct: 21 FAEAQQPQTPPRRNPPRAPPSPRRAPS 47
>11_06_0478 + 24073295-24074172,24074790-24075090
Length = 392
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 315 CLESTRRLRRRSGPDQRACRTRLTSRPRDRY 407
C +TRR P QRACR +T+ P Y
Sbjct: 87 CNPATRRRATLPPPPQRACRDDVTAIPVGEY 117
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 134 LYPSSGRMLSSCKVRTGTRGSKDPDTLRAEGIRRMRIAASVGPR 3
L PSS R++SSC + T+R+ G +AAS+ P+
Sbjct: 11 LLPSSLRIISSCLKTVSSNAGSVASTVRSAG---ASVAASIAPQ 51
>01_06_1420 + 37229111-37229601,37229682-37230084
Length = 297
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 265 ETYRR*ESVPAGKATYPVSNRRDASADGPAPIKEL 369
+ +R+ ESVPAG+ + +DA+ G P EL
Sbjct: 225 DAWRKWESVPAGRLFLGLPASKDAAGTGFVPAGEL 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,609
Number of Sequences: 37544
Number of extensions: 315131
Number of successful extensions: 1216
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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