Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B14
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 281 4e-76
03_02_0189 - 6253659-6255380 31 0.47
04_01_0596 - 7852529-7855185,7855545-7855581 31 0.62
08_02_1061 - 24014667-24014965,24015274-24015385 30 1.1
01_05_0227 - 19512866-19514983 30 1.1
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 3.3
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 28 5.8
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 281 bits (688), Expect = 4e-76
Identities = 130/168 (77%), Positives = 145/168 (86%)
Frame = -2
Query: 553 RDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKAWKRMVTK 374
RD RAKVLSN IKQKR EKAGKW+VP+PKVR A+ E+FKVL++GK K K WKRMVTK
Sbjct: 423 RDQTQRAKVLSNTIKQKRMEKAGKWEVPLPKVRPVAEEEMFKVLRTGKRKTKQWKRMVTK 482
Query: 373 VTYVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLG 194
T+VG FTRKPPK+ERFIRP LRF KAHVTHPELK TF L II VKKNP+ QMY++LG
Sbjct: 483 ATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLDIISVKKNPNGQMYSTLG 542
Query: 193 VITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 50
V+T+GT+IEVN+SELGLVT AGKVVWGKYAQVTNNPENDGCINAVLLV
Sbjct: 543 VLTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 590
>03_02_0189 - 6253659-6255380
Length = 573
Score = 31.5 bits (68), Expect = 0.47
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Frame = -2
Query: 520 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV--LQSGKTKRKAWKRMVTKVTYVGENFT 347
N ++ +KEKA + P P RA A KV S K K V K T +
Sbjct: 68 NKVEYGKKEKATRIGGPKPSSRASALKVKPKVSSFNSKPAKSTLPKSAVVKKTLKIDESL 127
Query: 346 RKPPKFERFIRPMAL--RFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTV 173
FE P L R K ++ P + +PII K + Q YT G T +
Sbjct: 128 FSAKSFEELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSGK-TLAYL 186
Query: 172 IEVNISELG 146
+ + +SE+G
Sbjct: 187 LPI-LSEIG 194
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 31.1 bits (67), Expect = 0.62
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 411 LPDCNTLNTSASACAL--TFGIGTSHLPAFSLRFCLIILD 524
LP+C T+ + SACA F GT + A+SL+ CL+ LD
Sbjct: 405 LPNCVTIISVLSACASLGAFSQGT-EIHAYSLKNCLLTLD 443
>08_02_1061 - 24014667-24014965,24015274-24015385
Length = 136
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 255 NVAFNSGCVTCAFLKRSAIGLINLSNFGGLRVKFSPTYV 371
N A + GC + L R A I + G +R+ ++PTYV
Sbjct: 98 NCASSDGCTSTIDLSREAFAKIANLDAGVIRITYNPTYV 136
>01_05_0227 - 19512866-19514983
Length = 705
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 374 FCNHAFPSFPLCFTRL*HFEYFSVSLCSDL 463
FC AF P C T L H +Y +S C++L
Sbjct: 549 FCT-AFKHLPQCITLLGHLQYVDLSCCTEL 577
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 411 LPDCNTLNTSASACAL--TFGIGTSHLPAFSLRFCLIILD 524
LP+C T+ + SACA F G + A+SL+ CL+ LD
Sbjct: 513 LPNCVTIISVLSACASLGAFSQG-MEIHAYSLKNCLLTLD 551
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/81 (27%), Positives = 32/81 (39%)
Frame = +3
Query: 237 PIMGKQNVAFNSGCVTCAFLKRSAIGLINLSNFGGLRVKFSPTYVTFVTMRFQAFLFVLP 416
PI+ + AFN A +K + LI + GL+V F + F + F
Sbjct: 389 PIITITDNAFNPVGYCLAIMKSEGVNLIGENFMSGLKVVFDRERMVLGWKNFNCYNFDES 448
Query: 417 DCNTLNTSASACALTFGIGTS 479
+N S SA G+G S
Sbjct: 449 SRLPVNPSPSAVPSKPGLGPS 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,176
Number of Sequences: 37544
Number of extensions: 307109
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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