Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B14
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical pr...   295   2e-80
AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical ...   295   2e-80
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    31   0.56 
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     31   0.56 
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    31   0.56 
U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z48582-4|CAI46606.1|  349|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protei...    27   9.1  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF047661-1|AAK71388.2|  915|Caenorhabditis elegans Hypothetical ...    27   9.1  
AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score =  295 bits (723), Expect = 2e-80
 Identities = 135/168 (80%), Positives = 154/168 (91%)
 Frame = -2

Query: 553 RDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKAWKRMVTK 374
           R  Q+   VLSNMIKQKRK+KAGK++VPIP+VRA +DAE FKV+++GKT RK WKRMVTK
Sbjct: 92  RQQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTK 151

Query: 373 VTYVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLG 194
           VT+VGE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+GVKKNPSSQMYTSLG
Sbjct: 152 VTFVGESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPSSQMYTSLG 211

Query: 193 VITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 50
           VITKGT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVLL+
Sbjct: 212 VITKGTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVLLI 259


>AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score =  295 bits (723), Expect = 2e-80
 Identities = 135/168 (80%), Positives = 154/168 (91%)
 Frame = -2

Query: 553 RDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKAWKRMVTK 374
           R  Q+   VLSNMIKQKRK+KAGK++VPIP+VRA +DAE FKV+++GKT RK WKRMVTK
Sbjct: 92  RQQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTK 151

Query: 373 VTYVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLG 194
           VT+VGE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+GVKKNPSSQMYTSLG
Sbjct: 152 VTFVGESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPSSQMYTSLG 211

Query: 193 VITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 50
           VITKGT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVLL+
Sbjct: 212 VITKGTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVLLI 259


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 77  IILWIVCYLCIFSPNYFTG 133
           +++WI+CYLCIF    +TG
Sbjct: 228 LLVWIICYLCIFKGVKWTG 246


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 77  IILWIVCYLCIFSPNYFTG 133
           +++WI+CYLCIF    +TG
Sbjct: 228 LLVWIICYLCIFKGVKWTG 246


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 77  IILWIVCYLCIFSPNYFTG 133
           +++WI+CYLCIF    +TG
Sbjct: 228 LLVWIICYLCIFKGVKWTG 246


>U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical
           protein K06A9.2 protein.
          Length = 516

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 290 FLETKCHWPDKPFKLWWFTCKVLSYICDF 376
           F + +C+W    FK WW   K   Y  D+
Sbjct: 35  FFDNECYWQKLMFKRWWVDRKFFRYQDDY 63


>AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical
           protein H22D07.1 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 14  FKTFIKALIHKLNQKHSINAAIILWIVCYLCIFSP-NYFTGL 136
           F     + IH+  Q     AA+I  IV YLCI+SP N FT L
Sbjct: 343 FGAMAVSTIHRAKQHAKRQAALI--IVAYLCIWSPYNLFTVL 382


>Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical
           protein T04A8.7b protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
 Frame = -2

Query: 502 RKEKAGKWDVPIPKVRAQA----DAEVFKVLQS--GKT--KRKAWKRMVT----KVTYV- 362
           +KE+ GKW + +P     +       V K+  S  G T  K   W   VT    K T + 
Sbjct: 20  KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 79

Query: 361 GENFTRKPPKFE----RFIRPMALRFKKAHV 281
            +NF   P K++    R  RP +LR  +AHV
Sbjct: 80  HQNFWNPPEKYQLKEARPARPASLRIYEAHV 110


>Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical
           protein T04A8.7a protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
 Frame = -2

Query: 502 RKEKAGKWDVPIPKVRAQA----DAEVFKVLQS--GKT--KRKAWKRMVT----KVTYV- 362
           +KE+ GKW + +P     +       V K+  S  G T  K   W   VT    K T + 
Sbjct: 95  KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 154

Query: 361 GENFTRKPPKFE----RFIRPMALRFKKAHV 281
            +NF   P K++    R  RP +LR  +AHV
Sbjct: 155 HQNFWNPPEKYQLKEARPARPASLRIYEAHV 185


>Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical
           protein B0035.5 protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 111 FPQTTLPACVTRPNSEMFTSITVPFVITPKLVYIWELGFFLTPIM 245
           F +  LP    R   E+F    + FV T +L Y W +   LTP++
Sbjct: 436 FKEVRLPDAYERLFLEVFMGSQINFVRTDELEYAWRI---LTPVL 477


>Z48582-4|CAI46606.1|  349|Caenorhabditis elegans Hypothetical
           protein F27E5.8 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 416 RL*HFEYFSVSLCSDLWYWYIPFTGFLFTFL 508
           RL  F + S SLCS    W+IP    L  FL
Sbjct: 111 RLTRFAFHSYSLCSKEPLWFIPMFMILGNFL 141


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +2

Query: 332 LWWFTCKVLSYICD-FCNHAF---PSFPLCFTRL*HFEYFS-VSLCSDLWYWYIPFTGFL 496
           L+ F+   L  IC+ +  + F    S P  F +L   + F+  ++C    +W +P TG  
Sbjct: 22  LFTFSISFLGSICNLYLFYKFVTRASKPSGFQKLCTMKTFTNCTICMSFLFWVVPITGLS 81

Query: 497 FTF 505
            TF
Sbjct: 82  LTF 84


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 426 CYSLVKQRGKLGNAWLQKSHM*ERTLHVN 340
           CY ++ QR  +  AWL ++   E++ HV+
Sbjct: 116 CYLIIFQRPNILEAWLTRAQQVEKSNHVD 144


>U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical
           protein F10G2.7 protein.
          Length = 674

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 428 FEYFSVSLCSDLWYWYIPF 484
           FE  S  LC+D ++W+ PF
Sbjct: 562 FEMRSSQLCTDAFHWFTPF 580


>U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protein 8
           protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -2

Query: 469 IPKVRAQADAEVFKVLQSGKTKRKAWKRMVTKVTYVG----ENFTRKPPKFE 326
           I ++++  D E+F+     K     W+R+VTK TY G    E     PP FE
Sbjct: 19  IKQLQSDFDDEMFEFRAITKD---TWQRIVTKHTYPGGVDEETIESHPPTFE 67


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = -2

Query: 538 RAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKAWKRM 383
           + K L    K K  +   KW+    K+      ++ K +   +T R  WK +
Sbjct: 127 KLKDLETFDKTKVDDVIAKWEEASEKISGAGSVDLHKAIVDAQTVRTMWKNV 178


>AF047661-2|AAK71389.1|  886|Caenorhabditis elegans Hypothetical
           protein M70.3b protein.
          Length = 886

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = -2

Query: 538 RAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKAWKRM 383
           + K L    K K  +   KW+    K+      ++ K +   +T R  WK +
Sbjct: 116 KLKDLETFDKTKVDDVIAKWEEASEKISGAGSVDLHKAIVDAQTVRTMWKNV 167


>AF047661-1|AAK71388.2|  915|Caenorhabditis elegans Hypothetical
           protein M70.3a protein.
          Length = 915

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = -2

Query: 538 RAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSGKTKRKAWKRM 383
           + K L    K K  +   KW+    K+      ++ K +   +T R  WK +
Sbjct: 145 KLKDLETFDKTKVDDVIAKWEEASEKISGAGSVDLHKAIVDAQTVRTMWKNV 196


>AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.3 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 20  TFIKALIHKLNQKHSINAAIILWIVCYLCIFSPNYF 127
           TF + LI  ++   SI A  IL ++C +C+ S N+F
Sbjct: 156 TFCEKLI--VSSLWSIVAGCILLLICVVCLCSANWF 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,016,426
Number of Sequences: 27780
Number of extensions: 287851
Number of successful extensions: 953
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)