Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B11
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310...    29   1.9  
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971...    28   4.5  
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812...    28   5.9  
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338     28   5.9  
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542...    28   5.9  
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    28   5.9  
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    28   5.9  
04_04_0236 + 23825368-23825763,23826229-23828667                       27   7.8  

>03_01_0401 -
           3108477-3108689,3108787-3108933,3109022-3109234,
           3109321-3109938,3110045-3110584,3110941-3111041,
           3111208-3111325,3111450-3111535,3111888-3112002
          Length = 716

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 509 ATNGYDTNGYDTNGY 553
           +TNGY +NGY +NGY
Sbjct: 363 STNGYGSNGYGSNGY 377



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 521 YDTNGYDTNGYVTNG 565
           Y TNGY +NGY +NG
Sbjct: 362 YSTNGYGSNGYGSNG 376


>03_02_0596 +
           9714022-9714065,9714799-9714868,9714978-9715883,
           9715973-9716146,9716260-9716373,9716975-9717033,
           9717170-9717236,9717305-9717356,9718070-9718488,
           9718786-9718847,9719305-9719374,9719730-9719831,
           9719933-9720063,9720492-9720606,9720792-9720827
          Length = 806

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 291 RNLNGMYMQNLQLFVEVLRQRHPEDQPYHNQSSNIKNNPPK 413
           R + G Y + L    E L +++PEDQ   +Q +N +  PP+
Sbjct: 351 RKITGYYNKLLDEGTEELDEKNPEDQELKDQ-TNAQKKPPE 390


>12_02_0486 +
           19577507-19577568,19578119-19578218,19581128-19581214,
           19581852-19581914
          Length = 103

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 387 SNIKNNPPKNVAPSSGITGMYGNP 458
           SN+ N+ PKN  P S +  + GNP
Sbjct: 4   SNVWNSHPKNYGPGSRVCRVCGNP 27


>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
          Length = 56

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 387 SNIKNNPPKNVAPSSGITGMYGNP 458
           SN+ N+ PKN  P S +  + GNP
Sbjct: 4   SNVWNSHPKNYGPGSRVCRVCGNP 27


>04_04_1248 -
           32051679-32052356,32053617-32053778,32054147-32054269,
           32054686-32054793
          Length = 356

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 219 ICPILCLSSRILIQSKTLCHYIECHVANY 133
           + P+L LSS IL  S+ LC    C VA++
Sbjct: 176 LSPLLSLSSLILFPSRALCCECGCGVASH 204


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 387 SNIKNNPPKNVAPSSGITGMYGNP 458
           SN+ N+ PKN  P S +  + GNP
Sbjct: 4   SNVWNSHPKNYGPGSRVCRVCGNP 27


>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 416 CSTIQWDNWDVWKP*WSTN--DDVTNEAITNRDATNGYDTNGYDTN 547
           CS    D  D+ +P + T   DD  +  +TN  +T+G  +NG D N
Sbjct: 237 CSKDSQDYNDMGEPRYDTETFDDYPSLPVTNFFSTDGVGSNGVDKN 282


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 246 VTVGVADEGDAAMLVRNLNGMYMQNLQLFVEVLRQRHPEDQPYHNQSSNIKNNPPKNVAP 425
           V +G  D  DA   V ++     + ++ F E  + R P D P      N K++ P N   
Sbjct: 787 VEMGATDP-DAMEYVLSVMKEAKEKVRKFEESRKDRRPGDSPVSTGKRNGKSSRPSNEDG 845

Query: 426 SSGIT 440
            +GI+
Sbjct: 846 GNGIS 850


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,068,300
Number of Sequences: 37544
Number of extensions: 207987
Number of successful extensions: 618
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)