Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B11
         (565 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2671|AAF49514.1|   97|Drosophila melanogaster CG13069-P...    36   0.029
X04132-3|CAA27749.1|  455|Drosophila melanogaster protein ( Dros...    31   1.1  
AY928609-1|AAX28842.1|  451|Drosophila melanogaster ORF2 protein.      31   1.1  

>AE014296-2671|AAF49514.1|   97|Drosophila melanogaster CG13069-PA
           protein.
          Length = 97

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = -2

Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
           P+V  P+V+ P+V+ P+VAS +V + +V S +V
Sbjct: 53  PYVASPYVASPYVASPYVASPYVASPYVASPYV 85



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = -2

Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSF 469
           P+V  P+V+ P+V+ P+VAS +V + +V + +
Sbjct: 58  PYVASPYVASPYVASPYVASPYVASPYVAAPY 89


>X04132-3|CAA27749.1|  455|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 455

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 515 NGYDTNGYDTNGYVTNG 565
           NGY  NGY  NGY  NG
Sbjct: 383 NGYQNNGYQNNGYQNNG 399


>AY928609-1|AAX28842.1|  451|Drosophila melanogaster ORF2 protein.
          Length = 451

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 515 NGYDTNGYDTNGYVTNG 565
           NGY  NGY  NGY  NG
Sbjct: 379 NGYQNNGYQNNGYQNNG 395


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,472
Number of Sequences: 53049
Number of extensions: 389538
Number of successful extensions: 1456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)