Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B11
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 31 0.43
Z93378-4|CAE17803.1| 514|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical pr... 30 1.0
AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical ... 30 1.3
U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical pr... 28 4.0
AL032654-11|CAB63389.2| 529|Caenorhabditis elegans Hypothetical... 28 4.0
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p... 28 5.3
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF067613-13|ABA54415.1| 443|Caenorhabditis elegans Hypothetical... 27 7.0
X70832-1|CAA50180.1| 500|Caenorhabditis elegans Cytoplasmic int... 27 9.3
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 27 9.3
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 27 9.3
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 27 9.3
AF047657-10|AAK18940.2| 500|Caenorhabditis elegans Intermediate... 27 9.3
AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical ... 27 9.3
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSF 469
P V PF+ PF+ PF+ S VMA V S F
Sbjct: 726 PGVGLPFILSPFILSPFILSPVVMAPLVLSPF 757
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
PF+ PF+ PF+ P V + V++ F S F+
Sbjct: 731 PFILSPFILSPFILSPVVMAPLVLSPFALSPFI 763
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
P + P V PF+ PF+ S F+++ V + V
Sbjct: 721 PIILSPGVGLPFILSPFILSPFILSPVVMAPLV 753
>Z93378-4|CAE17803.1| 514|Caenorhabditis elegans Hypothetical
protein F19H8.5 protein.
Length = 514
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
P V PF+ P++ P++ S VMA F+ + +V
Sbjct: 401 PAVPLPFILSPYLLSPYIFSPLVMAPFILNPYV 433
>Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical
protein F19H8.4 protein.
Length = 749
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
P V PF+ P++ P+V S VMA F+ + +V
Sbjct: 655 PTVGIPFILSPYLLSPYVFSPLVMAPFILNPYV 687
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
P+V P V PF+ P++ S +V + V + F+
Sbjct: 650 PYVFSPTVGIPFILSPYLLSPYVFSPLVMAPFI 682
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
P V P+V P V PF+ S ++++ +V S V
Sbjct: 645 PSVLSPYVFSPTVGIPFILSPYLLSPYVFSPLV 677
>AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical
protein Y39D8B.3 protein.
Length = 731
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
PFV PFV PF+ P + +++ F S F+
Sbjct: 640 PFVLSPFVLTPFILSPVALTPIILSPFALSPFI 672
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSF 469
P V PFV PFV PF+ S + + S F
Sbjct: 635 PGVGLPFVLSPFVLTPFILSPVALTPIILSPF 666
>U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical
protein F47C10.3 protein.
Length = 370
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 171 TLCHYIECHVANYVQLLTLFKLLKGFVENTKLLI 70
++CH + V + L +LFKL F+E KL +
Sbjct: 331 SICHVVNKTVEDVTYLTSLFKLQMPFIEYKKLFV 364
>AL032654-11|CAB63389.2| 529|Caenorhabditis elegans Hypothetical
protein Y52B11A.7 protein.
Length = 529
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSFV 466
P V PFV PF+ P V + +++ F S F+
Sbjct: 440 PIVLSPFVLTPFILSPQVMTPIILSPFALSPFI 472
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 564 PFVTYPFVSYPFVSYPFVASLFVMASFVTSSF 469
P V P V PFV PF+ S VM + S F
Sbjct: 435 PGVANPIVLSPFVLTPFILSPQVMTPIILSPF 466
>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
protein ZK328.7b protein.
Length = 1098
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 126 TVHNLPHDTQYSDIKSLIESKCGLRDIILDKLLPEGATKKVTV-----GVADEGDAAMLV 290
T+H LP + + +++ G+ D I++ PEG+ + V G+ G+ +ML
Sbjct: 229 TIHFLPGHIEKAKASIMMKDWRGVMDCIMNADQPEGSNPYIEVLRTVHGICYAGEVSMLK 288
Query: 291 RNL 299
R L
Sbjct: 289 RTL 291
>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical
protein ZK328.7a protein.
Length = 1332
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 126 TVHNLPHDTQYSDIKSLIESKCGLRDIILDKLLPEGATKKVTV-----GVADEGDAAMLV 290
T+H LP + + +++ G+ D I++ PEG+ + V G+ G+ +ML
Sbjct: 229 TIHFLPGHIEKAKASIMMKDWRGVMDCIMNADQPEGSNPYIEVLRTVHGICYAGEVSMLK 288
Query: 291 RNL 299
R L
Sbjct: 289 RTL 291
>Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical
protein ZK643.6 protein.
Length = 180
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 220 NLSNIMSLKPHFDSIKDFMSLY*VSCGKLCTVINIVQTFKRIC 92
+L+N S + S+K++ SL C K C NI + ++C
Sbjct: 109 DLANDCSYNQNRCSVKEYSSLMHRLCPKTCNACNICEDANKMC 151
>AF067613-13|ABA54415.1| 443|Caenorhabditis elegans Hypothetical
protein F56D6.1 protein.
Length = 443
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 231 GATKKVTVGVADEGDAAMLVRNLNGMYMQNLQLFVEVLR--QRHPEDQPYHNQSSNIKNN 404
G + + +++ D +++ L Y+ + + V R R PED Y N + + +
Sbjct: 165 GGQQTILFAYSNDLDPSVVTDTLINSYLSSQPVTFAVSRFDLRQPEDIGYFNTYNQSRGS 224
Query: 405 PPKNVAPS 428
PK + PS
Sbjct: 225 NPKMIGPS 232
>X70832-1|CAA50180.1| 500|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 500
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 464 STNDDVTNEAITNRDATNGYDTNGYDTNGYVTNG 565
S+ T T ++GY GY + GY T G
Sbjct: 396 SSTHVATTTTTTTNGYSSGYTAGGYTSGGYTTGG 429
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 549 PFVSYPFVSYPFVASLFVMASFV 481
PFV+ FV+Y + +LFV++ FV
Sbjct: 615 PFVAIYFVAYHLLVTLFVLSLFV 637
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 549 PFVSYPFVSYPFVASLFVMASFV 481
PFV+ FV+Y + +LFV++ FV
Sbjct: 593 PFVAIYFVAYHLLVTLFVLSLFV 615
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 549 PFVSYPFVSYPFVASLFVMASFV 481
PFV+ FV+Y + +LFV++ FV
Sbjct: 615 PFVAIYFVAYHLLVTLFVLSLFV 637
>AF047657-10|AAK18940.2| 500|Caenorhabditis elegans Intermediate
filament, c protein 1 protein.
Length = 500
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 464 STNDDVTNEAITNRDATNGYDTNGYDTNGYVTNG 565
S+ T T ++GY GY + GY T G
Sbjct: 396 SSTHVATTTTTTTNGYSSGYTAGGYTSGGYTTGG 429
>AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical
protein ZK355.6 protein.
Length = 465
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 294 NLNGMYMQNLQLFVEVLRQRHPEDQPYHNQSSNIKNNP 407
++ M++QNL F++ LR ++ Y N N++NNP
Sbjct: 227 DIQQMHLQNLS-FLKKLRVVRAKNFMYENVIVNVRNNP 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,988,516
Number of Sequences: 27780
Number of extensions: 208149
Number of successful extensions: 824
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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